RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PRB4P10163 310 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 EVI2AP22794 236 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 RNF125Q96EQ8 232 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 A8MWV9 139 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 SLC25A48Q6ZT89 311 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 MRPS16Q9Y3D3 137 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 COX11Q9Y6N1 276 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 SYS1-DBNDD2H3BUS1 97 aa16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 RASL11AQ6T310 242 aa16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 C1orf162Q8NEQ5 155 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 ASCL2Q99929 193 aa16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 PNRC2Q9NPJ4 139 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 ZNF815PA8K554 130 aa16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 FOXG1P55316 489 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 SRSF1Q07955 248 aaKnown RBP eCLIP16.16■□□□□ 0.188e-7■■■■□ 25.6
CCDC88B-202ENST00000356786 MRPL27Q9P0M9 148 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 PSPNO60542 156 aa16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 LHX2P50458 406 aa16.16■□□□□ 0.18
CCDC88B-202ENST00000356786 IGLV3-19P01714 112 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 LHFPL4Q7Z7J7 247 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 NUP35Q8NFH5 326 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 LY96Q9Y6Y9 160 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 NPSP0C0P6 89 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 CKS1BP61024 79 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 LY6EQ16553 131 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 RRN3P1Q2M238 152 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 ACACAQ13085 2346 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 FHL1Q13642 323 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 C10orf91Q5T1B1 145 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 FDCSPQ8NFU4 85 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 MCRIP2Q9BUT9 160 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 TNFRSF18Q9Y5U5 241 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 FER1L5A0AVI2 2057 aa16.15■□□□□ 0.18
CCDC88B-202ENST00000356786 H7C1H1 209 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 GTSCR1Q86UQ5 136 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 C10orf55Q5SWW7 151 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 ARTNQ5T4W7 220 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 TRGV3P03979 118 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 NTF4P34130 210 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 SNRPD3P62318 126 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 MAJINQ3KP22 176 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 PPP1R27Q86WC6 154 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 E9PQ18 207 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 IGHV4-39P01824 125 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 CDKN1AP38936 164 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 ZNF138P52744 262 aa16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 MRPS18CQ9Y3D5 142 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-202ENST00000356786 PI4KAP42356 2102 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 RAX2Q96IS3 184 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 NPIPB5A8MRT5 1133 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 D6R8Y8 96 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 NPFFO15130 113 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 NCR2O95944 276 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 PVRIGQ6DKI7 326 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 ARPC1AQ92747 370 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 CYSLTR1Q9Y271 337 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 CD5LO43866 347 aa16.13■□□□□ 0.17
CCDC88B-202ENST00000356786 B9A039 149 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 KIR3DL3Q8N743 410 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 LOC102723996A0A087X1L8 192 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 FTH1P19P0C7X4 201 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 PRB3Q04118 309 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 MGAMO43451 1857 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 TRAV3A0A0B4J244 114 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 ESDP10768 282 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 FXYD7P58549 80 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 GAGE2BQ13066 116 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 KIR3DS1Q14943 382 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 GAGE2EQ4V326 116 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 GAGE2DQ9UEU5 116 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 DOCK9Q9BZ29 2069 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 SLC25A2Q9BXI2 301 aa16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 RSPO3Q9BXY4 272 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 LSM4Q9Y4Z0 139 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-202ENST00000356786 CFPP27918 469 aa16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 CLEC19AQ6UXS0 136 aa16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 CD300EQ496F6 205 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 C8orf46Q8TAG6 207 aa16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 CHTOPQ9Y3Y2 248 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 C15orf62A8K5M9 175 aa16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 Q0VG73 95 aa16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 TMEM42Q69YG0 159 aa16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 EXOC3-AS1Q8N2X6 119 aa16.11■□□□□ 0.17
CCDC88B-202ENST00000356786 TRAV2A0A0B4J234 112 aa16.1■□□□□ 0.17
CCDC88B-202ENST00000356786 TRAV12-3A0A0B4J271 114 aa16.1■□□□□ 0.17
CCDC88B-202ENST00000356786 ORMDL2Q53FV1 153 aa16.1■□□□□ 0.17
CCDC88B-202ENST00000356786 SMPXQ9UHP9 88 aa16.1■□□□□ 0.17
CCDC88B-202ENST00000356786 FNDC1Q4ZHG4 1894 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-202ENST00000356786 PMS2P5A8MQ11 134 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 TCRAP04437 139 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 OCIAD2Q56VL3 154 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 RPRMLQ8N4K4 120 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 PLCE1Q9P212 2302 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 C17orf100A8MU93 164 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 RNASE4P34096 147 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 CLEC2AQ6UVW9 174 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 CST9LQ9H4G1 147 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 GFRA3O60609 400 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 LILRA1O75019 489 aa16.09■□□□□ 0.17
CCDC88B-202ENST00000356786 PAX2Q02962 417 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms