RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 PSG1P11464 419 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 C5orf64Q2M2E5 130 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 DOCK5Q9H7D0 1870 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 ANKRD36A6QL64 1941 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 NPIPB5A8MRT5 1133 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 ITGB1BP1O14713 200 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 MLNRO43193 412 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 LYPD3O95274 346 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 TMEM155Q4W5P6 130 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 AGMATQ9BSE5 352 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 J3QRE1 110 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 TNFSF13O75888 250 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 CD59P13987 128 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 CD24P25063 80 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 PPIFP30405 207 aaKnown RBP5.31□□□□□ -1.56
UPF2-201ENST00000356352 LTBRP36941 435 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 SSBP2P81877 361 aaPredicted RBP5.31□□□□□ -1.56
UPF2-201ENST00000356352 C6orf226Q5I0X4 101 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 KLF17Q5JT82 389 aaPredicted RBP5.31□□□□□ -1.56
UPF2-201ENST00000356352 FLVCR1-AS1Q8TAF5 88 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 MEGF9Q9H1U4 602 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 PARP14Q460N5 1801 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 PMS2P5A8MQ11 134 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 D6R8Y8 96 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 H0YJW9 148 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 BUB1B-PAK6H3BSN5 160 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 UBE2CO00762 179 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 SH2D1AO60880 128 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 SRSF4Q08170 494 aaKnown RBP5.31□□□□□ -1.56
UPF2-201ENST00000356352 FAM90A2PQ658T7 463 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 ZFAND6Q6FIF0 208 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 MRPL52Q86TS9 123 aaKnown RBP5.31□□□□□ -1.56
UPF2-201ENST00000356352 VWCEQ96DN2 955 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 GFRA4Q9GZZ7 299 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 CACNA1CQ13936 2221 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 PINLYPA6NC86 204 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 SRRM4A7MD48 611 aaKnown RBP5.31□□□□□ -1.56
UPF2-201ENST00000356352 LYNX1G3V0Z9 82 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 CD55P08174 381 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 LYNX1P0DP58 116 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 C1QL4Q86Z23 238 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 PIP4P2Q8N4L2 257 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 RPL32P62910 135 aaKnown RBP5.31□□□□□ -1.56
UPF2-201ENST00000356352 LY6G6FQ5SQ64 297 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 LYZL1Q6UWQ5 148 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 NEGR1Q7Z3B1 354 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 GGNQ86UU5 652 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 SPANXA1Q9NS26 97 aa5.31□□□□□ -1.56
UPF2-201ENST00000356352 PCM1Q15154 2024 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 H3BUX3 64 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 SRD5A1P18405 259 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HOXD3P31249 432 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 BTCP35070 178 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 RPL15P61313 204 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 GAGE2BQ13066 116 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 DEFB121Q5J5C9 76 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 ACTL10Q5JWF8 245 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 TRPT1Q86TN4 253 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 LY6G5BQ8NDX9 201 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 SPANXDQ9BXN6 97 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 LSM4Q9Y4Z0 139 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 COL11A1P12107 1806 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 IGHV3-64A0A075B6Q5 118 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 A0A0A6YYD4 124 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 RHODO00212 210 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 PDE6HQ13956 83 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 LY6DQ14210 128 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 BMPERQ8N8U9 685 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 KLHL30-AS1Q8NEE0 82 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 NABP1Q96AH0 204 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 SCRT1Q9BWW7 348 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 WFDC1Q9HC57 220 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 DAZ1Q9NQZ3 744 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 MRPL27Q9P0M9 148 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 TRAV5A0A0B4J249 113 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 MBD3L4A6NDZ8 208 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 MBD3L3A6NE82 208 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 MBD3L5A6NJ08 208 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BKO60814 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BJP06899 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BOP23527 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BBP33778 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BDP58876 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H4AP62805 103 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BCP62807 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST2H2BEQ16778 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 MBD3L2Q8NHZ7 208 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BHQ93079 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 GAFA1Q96PS6 74 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BNQ99877 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BMQ99879 126 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 TIMM21Q9BVV7 248 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 KIAA0100Q14667 2235 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 COL4A5P29400 1685 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 RPL35AP18077 110 aaKnown RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 LCN12Q6JVE5 192 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 PAQR4Q8N4S7 273 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 DLX4Q92988 240 aaPredicted RBP5.3□□□□□ -1.56
UPF2-201ENST00000356352 RMI2Q96E14 147 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms