RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NUP37Q8NFH4 326 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 HINT2Q9BX68 163 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 CSTL1Q9H114 145 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 CLEC5AQ9NY25 188 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 DMXL2Q8TDJ6 3036 aa12.83□□□□□ -0.35
HMGA1-202ENST00000347617 ZGRF1Q86YA3 2104 aa12.83□□□□□ -0.36
HMGA1-202ENST00000347617 SAA2P0DJI9 122 aaPredicted RBP12.83□□□□□ -0.36
HMGA1-202ENST00000347617 PSG1P11464 419 aa12.83□□□□□ -0.36
HMGA1-202ENST00000347617 PRR30Q53SZ7 412 aaPredicted RBP12.83□□□□□ -0.36
HMGA1-202ENST00000347617 C10orf113Q5VZT2 155 aa12.83□□□□□ -0.36
HMGA1-202ENST00000347617 TMEM108Q6UXF1 575 aa12.83□□□□□ -0.36
HMGA1-202ENST00000347617 PRORYQ9H606 182 aa12.83□□□□□ -0.36
HMGA1-202ENST00000347617 IGKV1D-17A0A075B6S4 117 aa12.82□□□□□ -0.36
HMGA1-202ENST00000347617 TEX50A0A1B0GTY4 177 aa12.82□□□□□ -0.36
HMGA1-202ENST00000347617 CD40P25942 277 aa12.82□□□□□ -0.36
HMGA1-202ENST00000347617 CAMPP49913 170 aa12.82□□□□□ -0.36
HMGA1-202ENST00000347617 ERHP84090 104 aaKnown RBP12.82□□□□□ -0.36
HMGA1-202ENST00000347617 SPATA12Q7Z6I5 190 aa12.82□□□□□ -0.36
HMGA1-202ENST00000347617 GPR82Q96P67 336 aa12.82□□□□□ -0.36
HMGA1-202ENST00000347617 MUC21A0A0G2JKD1 596 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 MUC21A0A140T8X8 626 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 TMEM8BA6NDV4 472 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 MYCNOSP40205 109 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 CT45A1Q5HYN5 189 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 MUC21Q5SSG8 566 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 AMMECR1LQ6DCA0 310 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 GTF2H5Q6ZYL4 71 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 CT45A3Q8NHU0 189 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 H1FXQ92522 213 aaKnown RBP12.81□□□□□ -0.36
HMGA1-202ENST00000347617 FMC1Q96HJ9 113 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 PRSS22Q9GZN4 317 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 ZNF430Q9H8G1 570 aaPredicted RBP12.81□□□□□ -0.36
HMGA1-202ENST00000347617 KBTBD11-OT1A0A1B0GTJ5 212 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 OR2T8A6NH00 312 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 M0QZ24 198 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 GPR183P32249 361 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 GPR6P46095 362 aaPredicted RBP12.81□□□□□ -0.36
HMGA1-202ENST00000347617 PSG9Q00887 426 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 FBXL19-AS1Q494R0 122 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 RBPMS2Q6ZRY4 209 aaKnown RBP12.81□□□□□ -0.36
HMGA1-202ENST00000347617 TCF24Q7RTU0 167 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 OR9G1Q8NH87 305 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 NGBQ9NPG2 151 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 EPDR1Q9UM22 224 aa12.81□□□□□ -0.36
HMGA1-202ENST00000347617 HEATR1Q9H583 2144 aaKnown RBP12.8□□□□□ -0.36
HMGA1-202ENST00000347617 TFF1P04155 84 aa12.8□□□□□ -0.36
HMGA1-202ENST00000347617 COX8AP10176 69 aa12.8□□□□□ -0.36
HMGA1-202ENST00000347617 SUB1P53999 127 aaKnown RBP eCLIP12.8□□□□□ -0.365e-8■□□□□ 8.7
HMGA1-202ENST00000347617 PDPNQ86YL7 162 aa12.8□□□□□ -0.36
HMGA1-202ENST00000347617 KIR3DL3Q8N743 410 aa12.8□□□□□ -0.36
HMGA1-202ENST00000347617 THAP8Q8NA92 274 aa12.8□□□□□ -0.36
HMGA1-202ENST00000347617 OSR1Q8TAX0 266 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-202ENST00000347617 SSBP4Q9BWG4 385 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-202ENST00000347617 TANC2Q9HCD6 1990 aa12.8□□□□□ -0.36
HMGA1-202ENST00000347617 SPTBN4Q9H254 2564 aa12.8□□□□□ -0.36
HMGA1-202ENST00000347617 TCRBV4S1A1TA0A5B7 111 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 GAGE12BA1L429 117 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 IGLC1P0CG04 106 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 GATA2P23769 480 aaPredicted RBP12.79□□□□□ -0.36
HMGA1-202ENST00000347617 CEACAM3P40198 252 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 C17orf58Q2M2W7 97 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 LINC01545Q5VT33 79 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 OR4A5Q8NH83 315 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 FXYD5Q96DB9 178 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 MLST8Q9BVC4 326 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 LINC00574Q9H8X3 128 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 MAP1BP46821 2468 aaKnown RBP12.79□□□□□ -0.36
HMGA1-202ENST00000347617 LOC102724200A0A096LPH7 203 aaPredicted RBP12.79□□□□□ -0.36
HMGA1-202ENST00000347617 A0A1B0GW15 77 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 hDV102S1A0JD36 115 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 P01737 135 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 C22orf34Q6ZV56 151 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 BPIFA4PQ86YQ2 179 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 PERPQ96FX8 193 aa12.79□□□□□ -0.36
HMGA1-202ENST00000347617 DSCAML1Q8TD84 2053 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 C19orf71A6NCJ1 209 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 A6NDN8 102 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 SRRM4A7MD48 611 aaKnown RBP12.78□□□□□ -0.36
HMGA1-202ENST00000347617 CHEK1O14757 476 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 GATA4P43694 442 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 MSMPQ1L6U9 139 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 ST6GALNAC6Q969X2 333 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 DAZAP1Q96EP5 407 aaKnown RBP12.78□□□□□ -0.36
HMGA1-202ENST00000347617 PLPPR2Q96GM1 343 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 LINC00479Q96M42 142 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 PRR14LQ5THK1 2151 aa12.78□□□□□ -0.36
HMGA1-202ENST00000347617 LAMA5O15230 3695 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 TRAV5A0A0B4J249 113 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 VSTM5A8MXK1 200 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 HAX1O00165 279 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 SLC25A5P05141 298 aaKnown RBP12.77□□□□□ -0.36
HMGA1-202ENST00000347617 THBDP07204 575 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 C1orf229Q6ZS94 237 aaPredicted RBP12.77□□□□□ -0.36
HMGA1-202ENST00000347617 C5orf17Q8NAS9 161 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 GATD1Q8NB37 220 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 OR2Z1Q8NG97 314 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 OR1N2Q8NGR9 330 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 AP1S3Q96PC3 154 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 NDUFA4L2Q9NRX3 87 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 SH3BGRL2Q9UJC5 107 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms