RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ZFHX3Q15911 3703 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 H3BTX0 84 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 I3L2K1 104 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 CRISP2P16562 243 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 CD33P20138 364 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 PAX2Q02962 417 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 TMEM136Q6ZRR5 245 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 BAGE2Q86Y30 109 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 C14orf144Q96I85 54 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 RAB1BQ9H0U4 201 aa12.27□□□□□ -0.44
UPF3B-202ENST00000345865 MED13LQ71F56 2210 aa12.27□□□□□ -0.45
UPF3B-202ENST00000345865 HYPMO75409 117 aa12.27□□□□□ -0.45
UPF3B-202ENST00000345865 IGLC1P0CG04 106 aa12.27□□□□□ -0.45
UPF3B-202ENST00000345865 GP9P14770 177 aa12.27□□□□□ -0.45
UPF3B-202ENST00000345865 DDTP30046 118 aa12.27□□□□□ -0.45
UPF3B-202ENST00000345865 NHLH1Q02575 133 aa12.27□□□□□ -0.45
UPF3B-202ENST00000345865 HIVEP3Q5T1R4 2406 aa12.27□□□□□ -0.45
UPF3B-202ENST00000345865 PGPA6NDG6 321 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 CORTO00230 105 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 SERF1AO75920 110 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 NBEAP1P0C6P0 100 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 PSG1P11464 419 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 PLP1P60201 277 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 PLGLAQ15195 96 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 KIAA1644Q3SXP7 199 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 MRPL54Q6P161 138 aaKnown RBP12.26□□□□□ -0.45
UPF3B-202ENST00000345865 CMTM2Q8TAZ6 248 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 C22orf15Q8WYQ4 148 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 CFHR4Q92496 578 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 WNT10AQ9GZT5 417 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 C7orf69Q9H7B7 122 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 CBLN4Q9NTU7 201 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 EPDR1Q9UM22 224 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 A0A1W2PRD5 423 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 A0A1W2PRF3 423 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 A0A1W2PRM7 423 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 HTR1DP28221 377 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 RAB4BP61018 213 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 DEFA6Q01524 100 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 MMDQ15546 238 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 OR11H6Q8NGC7 330 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 MBD6Q96DN6 1003 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 NAT8BQ9UHF3 227 aa12.26□□□□□ -0.45
UPF3B-202ENST00000345865 TRBV9A0A0B4J1U6 114 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 A0A1W2PPR1 153 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 TSTD3H0UI37 97 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 NUDT10Q8NFP7 164 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 STXBP6Q8NFX7 210 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 NUDT11Q96G61 164 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 RNF5Q99942 180 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 FAM103A1Q9BTL3 118 aaKnown RBP12.25□□□□□ -0.45
UPF3B-202ENST00000345865 DPM3Q9P2X0 92 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 VPS13CQ709C8 3753 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 WNK2Q9Y3S1 2297 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 SLC25A5P05141 298 aaKnown RBP12.25□□□□□ -0.45
UPF3B-202ENST00000345865 SSX2Q16385 188 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 TMEM183BQ1AE95 376 aa12.25□□□□□ -0.45
UPF3B-202ENST00000345865 ITPR1Q14643 2758 aa12.24□□□□□ -0.45
UPF3B-202ENST00000345865 IGKV1-17P01599 117 aa12.24□□□□□ -0.45
UPF3B-202ENST00000345865 ESDP10768 282 aa12.24□□□□□ -0.45
UPF3B-202ENST00000345865 PRR27Q6MZM9 219 aa12.24□□□□□ -0.45
UPF3B-202ENST00000345865 MS4A10Q96PG2 267 aa12.24□□□□□ -0.45
UPF3B-202ENST00000345865 GNB4Q9HAV0 340 aa12.24□□□□□ -0.45
UPF3B-202ENST00000345865 RPH3ALQ9UNE2 315 aa12.24□□□□□ -0.45
UPF3B-202ENST00000345865 K7EIM0 57 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 CNIH1O95406 144 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 LYZP61626 148 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 Q0VG73 95 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 FAM231DQ6ZW35 169 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 Q6ZWC4 215 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 TIMD4Q96H15 378 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 KLF12Q9Y4X4 402 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 LOC105371242A0A075B767 164 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 IZUMO1RA6ND01 250 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 A8MWP6 167 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 ODF3BA8MYP8 253 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 LINC00322Q6ZN03 302 aaPredicted RBP12.23□□□□□ -0.45
UPF3B-202ENST00000345865 ZNF600Q6ZNG1 722 aa12.23□□□□□ -0.45
UPF3B-202ENST00000345865 NBR2O15453 112 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 GATCO43716 136 aaKnown RBP12.22□□□□□ -0.45
UPF3B-202ENST00000345865 SCGB1D1O95968 90 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 AMY1AP04745 511 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 IQCJQ1A5X6 159 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 KLF17Q5JT82 389 aaPredicted RBP12.22□□□□□ -0.45
UPF3B-202ENST00000345865 BAGE3Q86Y29 109 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 DYNAPQ8N1N2 210 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 HIGD1AQ9Y241 93 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 VWC2LB2RUY7 222 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 BMPR1BO00238 502 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 NDUFS7O75251 213 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 WDR73Q6P4I2 378 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 MLST8Q9BVC4 326 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 SLC25A39Q9BZJ4 359 aaPredicted RBP12.22□□□□□ -0.45
UPF3B-202ENST00000345865 Q9H3A6 140 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 ZNF586Q9NXT0 402 aa12.22□□□□□ -0.45
UPF3B-202ENST00000345865 NDUFA3O95167 84 aa12.21□□□□□ -0.45
UPF3B-202ENST00000345865 MT-ND6P03923 174 aa12.21□□□□□ -0.45
UPF3B-202ENST00000345865 PRTN3P24158 256 aa12.21□□□□□ -0.45
UPF3B-202ENST00000345865 UBE2G1P62253 170 aa12.21□□□□□ -0.45
UPF3B-202ENST00000345865 GDF5OSQ5U4N7 250 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms