RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 FNDC10F2Z333 226 aa7.35□□□□□ -1.23
ATG4A-202ENST00000345734 CYB5BO43169 146 aa7.35□□□□□ -1.23
ATG4A-202ENST00000345734 ACTL6BO94805 426 aa7.35□□□□□ -1.23
ATG4A-202ENST00000345734 IGHV3-48P01763 117 aa7.35□□□□□ -1.23
ATG4A-202ENST00000345734 FABP4P15090 132 aa7.35□□□□□ -1.23
ATG4A-202ENST00000345734 AREGP15514 252 aa7.35□□□□□ -1.23
ATG4A-202ENST00000345734 AKR1C3P42330 323 aa7.35□□□□□ -1.23
ATG4A-202ENST00000345734 RPL27AP46776 148 aaKnown RBP7.35□□□□□ -1.23
ATG4A-202ENST00000345734 CDC34P49427 236 aaPredicted RBP7.35□□□□□ -1.23
ATG4A-202ENST00000345734 COMPP49747 757 aaPredicted RBP7.35□□□□□ -1.23
ATG4A-202ENST00000345734 RPS20P60866 119 aaKnown RBP7.35□□□□□ -1.23
ATG4A-202ENST00000345734 FNDC4Q9H6D8 234 aaPredicted RBP7.35□□□□□ -1.23
ATG4A-202ENST00000345734 IGHV4-61A0A0C4DH41 118 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 A1L4Q6 167 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BKO60814 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BJP06899 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 NBEAP1P0C6P0 100 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BOP23527 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 GATA2P23769 480 aaPredicted RBP7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BBP33778 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 CEACAM3P40198 252 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 RPS10P46783 165 aaKnown RBP7.34□□□□□ -1.23
ATG4A-202ENST00000345734 MFAP2P55001 183 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BDP58876 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BCP62807 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 MMDQ15546 238 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST2H2BEQ16778 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 IQCJQ1A5X6 159 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 C19orf54Q5BKX5 351 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.34□□□□□ -1.23
ATG4A-202ENST00000345734 COL5A1-AS1Q5SY13 56 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 PRSS57Q6UWY2 283 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 TMEM144Q7Z5S9 345 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 ORAOV1Q8WV07 137 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BHQ93079 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BNQ99877 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BMQ99879 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 PITPNC1Q9UKF7 332 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 TEX22C9J3V5 150 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 M0R036 132 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 SNRNP70P08621 437 aaKnown RBP7.34□□□□□ -1.23
ATG4A-202ENST00000345734 LINC00869P0C866 280 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 OR10J1P30954 320 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 BRS3P32247 399 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 RPL29P47914 159 aaKnown RBP7.34□□□□□ -1.23
ATG4A-202ENST00000345734 ATP5J2P56134 94 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 RAB31Q13636 194 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 PLGLAQ15195 96 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 TMEM241Q24JQ0 296 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 C1orf194Q5T5A4 169 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 SPATA31B1PQ5VZV4 182 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 RUSC1-AS1Q66K80 236 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 ACY3Q96HD9 319 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 HIST1H2BLQ99880 126 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 RNF5Q99942 180 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 PIMREGQ9BSJ6 248 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 MRPL36Q9P0J6 103 aaKnown RBP7.34□□□□□ -1.23
ATG4A-202ENST00000345734 SLC45A2Q9UMX9 530 aa7.34□□□□□ -1.23
ATG4A-202ENST00000345734 USP9YO00507 2555 aaPredicted RBP7.34□□□□□ -1.24
ATG4A-202ENST00000345734 A0A1W2PPV4 95 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 MOSP00540 346 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 STAG3L3P0CL85 134 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 SUB1P53999 127 aaKnown RBP eCLIP7.33□□□□□ -1.24
ATG4A-202ENST00000345734 HES1Q14469 280 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 C10orf105Q8TEF2 133 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 ABHD5Q8WTS1 349 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 ISOC2Q96AB3 205 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 PERPQ96FX8 193 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 AJUBAQ96IF1 538 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 VAX2Q9UIW0 290 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 PTPN13Q12923 2485 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 ABCA12Q86UK0 2595 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 IGHV4-30-2A0A087WSY4 118 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 CBY3A6NI87 242 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 NBR2O15453 112 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 FOXH1O75593 365 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 IFNA1P01562 189 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 MINOS1Q5TGZ0 78 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 FAM90A2PQ658T7 463 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 SLC35E3Q7Z769 313 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 TMEM183AQ8IXX5 376 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 SRSF12Q8WXF0 261 aaKnown RBP7.33□□□□□ -1.24
ATG4A-202ENST00000345734 CACNG8Q8WXS5 425 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 SLC35E1Q96K37 410 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 RNF2Q99496 336 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 KCNIP2Q9NS61 270 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 MINOS1-NBL1R4GNA1 71 aa7.33□□□□□ -1.24
ATG4A-202ENST00000345734 TENM4Q6N022 2769 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 A0A087WWC5 75 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 IGHV3-21A0A0B4J1V1 117 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 VWC2LB2RUY7 222 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 H3BQ15 152 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 J3KRW8 73 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 ARL14EPLP0DKL9 152 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 UBE2E1P51965 193 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 RPL19P84098 196 aaKnown RBP7.32□□□□□ -1.24
ATG4A-202ENST00000345734 OR5I1Q13606 314 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 ZNF114Q8NC26 417 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 NPBQ8NG41 125 aa7.32□□□□□ -1.24
ATG4A-202ENST00000345734 NPIPB3Q92617 1050 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 421.2 ms