RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 SIRPDQ9H106 197 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 FGF22Q9HCT0 170 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 LINC01620Q4KN68 170 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 ZC2HC1BQ5TFG8 222 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 Q6ZNB5 142 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 NFE4Q86UQ8 179 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF295-AS1Q8N0V1 137 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 NABP2Q9BQ15 211 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 TP53TG1Q9Y2A0 90 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 SERP1Q9Y6X1 66 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 SMIM26A0A096LP01 95 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 NPC2P61916 151 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 ZC2HC1AQ96GY0 325 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 AGPAT4-IT1Q9H0P7 198 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 PGPA6NDG6 321 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 IGLV3-1P01715 115 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 FGF12P61328 243 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 PCP2Q8IVA1 136 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 NPIPB3Q92617 1050 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 C9orf85Q96MD7 179 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 TRAV12-2A0A075B6T6 113 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 A0A1W2PR77 199 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM150CB9EJG8 249 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 CDX4O14627 284 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-201ENST00000338963 PFN2P35080 140 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 CR1LQ2VPA4 569 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM155Q4W5P6 130 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 LINC00173Q6ZV60 143 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF714Q96N38 554 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 PAXXQ9BUH6 204 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 TRAV17A0A0B4J275 112 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 COX7A2P2O60397 106 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 C2orf82Q6UX34 121 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 NFAM1Q8NET5 270 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-201ENST00000338963 RITA1Q96K30 269 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 PGLYRP4Q96LB8 373 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 PRDM14Q9GZV8 571 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 SPRY1O43609 319 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-201ENST00000338963 IGLV2-8P01709 118 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 LEPP41159 167 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 C10orf128Q5T292 105 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 VN1R4Q7Z5H5 301 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 SERP2Q8N6R1 65 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 FOXC2Q99958 501 aa3.35□□□□□ -1.87
NEDD4-201ENST00000338963 C6orf106Q9H6K1 298 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-201ENST00000338963 DLL1O00548 723 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF137PP52743 207 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 PRR20EP86478 221 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 PRR20CP86479 221 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 PRR20DP86480 221 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 PRR20BP86481 221 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 PRR20AP86496 221 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 PRO1854Q9UHT4 67 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 ARFGEF1Q9Y6D6 1849 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 COL4A4P53420 1690 aaPredicted RBP3.34□□□□□ -1.87
NEDD4-201ENST00000338963 TRBV7-3A0A075B6L6 115 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 A0A0B4J2C4 111 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 METTL12A8MUP2 240 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 OOSP1A8MZH6 123 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 K7EQS6 105 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 SYNJ2BPP57105 145 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 DEFB121Q5J5C9 76 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 ZAR1Q86SH2 424 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 SLC22A18ASQ8N1D0 253 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 CYYR1Q96J86 154 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 U3KQK5 164 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 BAZ2AQ9UIF9 1905 aaKnown RBP3.34□□□□□ -1.87
NEDD4-201ENST00000338963 H7C1H1 209 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 SLC25A16P16260 332 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 IGFBP6P24592 240 aaPredicted RBP3.34□□□□□ -1.87
NEDD4-201ENST00000338963 SRSF2Q01130 221 aaKnown RBP3.34□□□□□ -1.87
NEDD4-201ENST00000338963 C10orf113Q5VZT2 155 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 IL17RELQ6ZVW7 336 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 A0A0G2JRQ6 117 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 KLK10O43240 276 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 IGFBP4P22692 258 aa3.34□□□□□ -1.87
NEDD4-201ENST00000338963 GREB1LQ9C091 1923 aaPredicted RBP3.34□□□□□ -1.87
NEDD4-201ENST00000338963 IGKV1D-13A0A0B4J2D9 117 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 K7ENP7 123 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1D-16P01601 117 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 CFC1BP0CG36 223 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 CFC1P0CG37 223 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1-13P0DP09 117 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 EBI3Q14213 229 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM86BQ8N661 226 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 LSM4Q9Y4Z0 139 aaKnown RBP3.34□□□□□ -1.88
NEDD4-201ENST00000338963 K7EMI3 77 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 NBR2O15453 112 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 FAM104BQ5XKR9 115 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 Q6ZRM9 215 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 FOXL2NBQ6ZUU3 175 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 MIR17HGQ75NE6 70 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 MRPL55Q7Z7F7 128 aaKnown RBP3.34□□□□□ -1.88
NEDD4-201ENST00000338963 CHCHD5Q9BSY4 110 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 PRSS22Q9GZN4 317 aa3.34□□□□□ -1.88
NEDD4-201ENST00000338963 CA6P23280 308 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 CD70P32970 193 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 SMCPP49901 116 aaPredicted RBP3.33□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM200BQ69YZ2 307 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF329Q86UD4 541 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms