RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 FAM90A2PQ658T7 463 aa11.33□□□□□ -0.6
RTN4-202ENST00000337526 FAM71F2Q6NXP2 309 aa11.33□□□□□ -0.6
RTN4-202ENST00000337526 COQ2Q96H96 371 aa11.33□□□□□ -0.6
RTN4-202ENST00000337526 SPSB3Q6PJ21 355 aa11.33□□□□□ -0.6
RTN4-202ENST00000337526 ALKBH7Q9BT30 221 aaPredicted RBP11.33□□□□□ -0.6
RTN4-202ENST00000337526 H7C1H1 209 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 APOMO95445 188 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 SUMO2P61956 95 aaKnown RBP11.32□□□□□ -0.6
RTN4-202ENST00000337526 ATP5L2Q7Z4Y8 100 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 C1orf147Q96MC9 270 aaPredicted RBP11.32□□□□□ -0.6
RTN4-202ENST00000337526 LHFPL4Q7Z7J7 247 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 SLC50A1Q9BRV3 221 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 PSMB11A5LHX3 300 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 PPIFP30405 207 aaKnown RBP11.32□□□□□ -0.6
RTN4-202ENST00000337526 TNFRSF14Q92956 283 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 ARFGEF3Q5TH69 2177 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 C15orf62A8K5M9 175 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 NDUFA3O95167 84 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 PPBPP02775 128 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 BMPERQ8N8U9 685 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 C5orf30Q96GV9 206 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 HS3ST6Q96QI5 342 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 TNFRSF18Q9Y5U5 241 aa11.32□□□□□ -0.6
RTN4-202ENST00000337526 PMS2P5A8MQ11 134 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 CDKN1AP38936 164 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 CACNG7P62955 275 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 C1orf194Q5T5A4 169 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 WDR81Q562E7 1941 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 IGKV3OR2-268A0A0C4DH90 116 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 WISP1O95388 367 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 PSG1P11464 419 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 CD33P20138 364 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 RHOGP84095 191 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 CHCHD1Q96BP2 118 aaKnown RBP11.31□□□□□ -0.6
RTN4-202ENST00000337526 NPIPB5A8MRT5 1133 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 TYMSP04818 313 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 ZNF585BQ52M93 769 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 TTC32Q5I0X7 151 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 KIR3DL3Q8N743 410 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 OR5AN1Q8NGI8 311 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 ZNF418Q8TF45 676 aaPredicted RBP11.31□□□□□ -0.6
RTN4-202ENST00000337526 C7orf69Q9H7B7 122 aa11.31□□□□□ -0.6
RTN4-202ENST00000337526 NXT2Q9NPJ8 142 aaKnown RBP11.31□□□□□ -0.6
RTN4-202ENST00000337526 MLNRO43193 412 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 GZMBP10144 247 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 PRB4P10163 310 aaPredicted RBP11.3□□□□□ -0.6
RTN4-202ENST00000337526 COPS9Q8WXC6 57 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 PLCE1Q9P212 2302 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 PLXNA3P51805 1871 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 IGKV1-6A0A0C4DH72 117 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 HAX1O00165 279 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 MRAP2Q96G30 205 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 CCL19Q99731 98 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 SLC25A15Q9Y619 301 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 MYOD1P15172 320 aa11.3□□□□□ -0.6
RTN4-202ENST00000337526 NHP2Q9NX24 153 aaKnown RBP11.3□□□□□ -0.6
RTN4-202ENST00000337526 RNASE4P34096 147 aaKnown RBP11.29□□□□□ -0.6
RTN4-202ENST00000337526 ACTL10Q5JWF8 245 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 TMEM200BQ69YZ2 307 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 IFI27L1Q96BM0 104 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 ZNF524Q96C55 264 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 MOB4Q9Y3A3 225 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 NPFFO15130 113 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 SCGB1A1P11684 91 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 ZNF124Q15973 351 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 SLC25A48Q6ZT89 311 aaKnown RBP11.29□□□□□ -0.6
RTN4-202ENST00000337526 EXOC3-AS1Q8N2X6 119 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 TMEM167AQ8TBQ9 72 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 FBLN7Q53RD9 439 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 VKORC1Q9BQB6 163 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 ST20Q9HBF5 79 aa11.29□□□□□ -0.6
RTN4-202ENST00000337526 ETV2O00321 342 aaPredicted RBP11.28□□□□□ -0.6
RTN4-202ENST00000337526 MDS2Q8NDY4 140 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 OR4X2Q8NGF9 303 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 FAM168AQ92567 244 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 LY96Q9Y6Y9 160 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 MYLKQ15746 1914 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 TCRAP04437 139 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 COLCA1Q6ZS62 124 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 TEX29Q8N6K0 151 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 BEND2Q8NDZ0 799 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 GLMPQ8WWB7 406 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 JKAMPQ9P055 326 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 IGKV1D-17A0A075B6S4 117 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 IGHV1-8P0DP01 117 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 SCRT1Q9BWW7 348 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 FNDC4Q9H6D8 234 aaPredicted RBP11.28□□□□□ -0.6
RTN4-202ENST00000337526 IGHV2-26A0A0B4J1V2 119 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 CSRP1P21291 193 aaKnown RBP11.28□□□□□ -0.6
RTN4-202ENST00000337526 PRR31Q5SQ13 230 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 LCN12Q6JVE5 192 aa11.28□□□□□ -0.6
RTN4-202ENST00000337526 MBNL3Q9NUK0 354 aaKnown RBP11.28□□□□□ -0.6
RTN4-202ENST00000337526 ZSWIM8A7E2V4 1837 aa11.27□□□□□ -0.6
RTN4-202ENST00000337526 FAM181BA6NEQ2 426 aa11.27□□□□□ -0.6
RTN4-202ENST00000337526 A6NNC1 897 aa11.27□□□□□ -0.61
RTN4-202ENST00000337526 DPM2O94777 84 aa11.27□□□□□ -0.61
RTN4-202ENST00000337526 PAX1P15863 534 aa11.27□□□□□ -0.61
RTN4-202ENST00000337526 SRSF1Q07955 248 aaKnown RBP eCLIP11.27□□□□□ -0.614e-8■■□□□ 12.3
RTN4-202ENST00000337526 SLC25A39Q9BZJ4 359 aaPredicted RBP11.27□□□□□ -0.61
RTN4-202ENST00000337526 A0A1B0GWJ7 208 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms