RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TMEM97Q5BJF2 176 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 FAM201AQ5SY85 155 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 PAXXQ9BUH6 204 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 TTTY12Q9BZ98 90 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 CSMD1Q96PZ7 3565 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 C9orf172C9J069 976 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 FXYD7P58549 80 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 SPRNQ5BIV9 151 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 UFSP1Q6NVU6 142 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 FAM231DQ6ZW35 169 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 BPIFA4PQ86YQ2 179 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 FOXA2Q9Y261 457 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 ZNF207O43670 478 aaKnown RBP10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 MOSP00540 346 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 HIST1H1EP10412 219 aaKnown RBP10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 PATE2Q6UY27 113 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 H1FXQ92522 213 aaKnown RBP10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 DEFB127Q9H1M4 99 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 PLSCR4Q9NRQ2 329 aa10.89□□□□□ -0.67
CCDC88C-201ENST00000331194 INTS1Q8N201 2190 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 IGKV1D-17A0A075B6S4 117 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 FAM106CPP0CH98 169 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 FAM106AQ4KMX7 169 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 OR4A5Q8NH83 315 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 ROS1P08922 2347 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 DSCAMO60469 2012 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 PSMB11A5LHX3 300 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 E7EUB6 86 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 TIMM8AO60220 97 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 CRYBA4P53673 196 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 DUX4L9Q6RFH8 374 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 ATP6V0BQ99437 205 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 SPTBN4Q9H254 2564 aa10.88□□□□□ -0.67
CCDC88C-201ENST00000331194 PPIAL4EA0A075B759 164 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 PPIAL4CA0A0B4J2A2 164 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 TNFSF15O95150 251 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 HLA-DRB1P01911 266 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 SLC25A5P05141 298 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 CYC1P08574 325 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 PPIAL4FP0DN26 164 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 COX8AP10176 69 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 TM4SF20Q53R12 229 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 RND1Q92730 232 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 RABAC1Q9UI14 185 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 NBASA2RRP1 2371 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 TEX50A0A1B0GTY4 177 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 SP9P0CG40 484 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 MC5RP33032 325 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 TMEM177Q53S58 311 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 AP1S3Q96PC3 154 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 FAM173AQ9BQD7 235 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 PGPA6NDG6 321 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 COX7A2P2O60397 106 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 GUSBP1Q15486 140 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 PRR7Q8TB68 274 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 CHCHD1Q96BP2 118 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 C1RLQ9NZP8 487 aa10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 MRPL36Q9P0J6 103 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-201ENST00000331194 TACC2O95359 2948 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 TRAV8-1A0A0A6YYK1 113 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 LIPFP07098 398 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 RPL24P83731 157 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 MEF2CQ06413 473 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 RUSC1-AS1Q66K80 236 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 DHRS13Q6UX07 377 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 FXYD5Q96DB9 178 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 CXXC4Q9H2H0 198 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 JPT1Q9UK76 154 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 RNASE2P10153 161 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 ACP1P24666 158 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 REG1BP48304 166 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 PLP1P60201 277 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 PET117Q6UWS5 81 aa10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 RPP21Q9H633 154 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-201ENST00000331194 COL12A1Q99715 3063 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 A6NJY4 79 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 FNDC10F2Z333 226 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 CHEK1O14757 476 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 IGHV1-2P23083 117 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 KIR3DS1Q14943 382 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 C10orf113Q5VZT2 155 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 NEU4Q8WWR8 484 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 NPIPB3Q92617 1050 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 ACACAQ13085 2346 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 ADGRG4Q8IZF6 3080 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 C9orf118A6NHY6 69 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 OR5AL1P0C617 328 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 PRCDQ00LT1 54 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 LOXL1Q08397 574 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 ATP5L2Q7Z4Y8 100 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 PIP4P2Q8N4L2 257 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 OR8A1Q8NGG7 326 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 PERPQ96FX8 193 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 CALYQ9NYX4 217 aa10.85□□□□□ -0.67
CCDC88C-201ENST00000331194 A0A0G2JLM5 398 aa10.84□□□□□ -0.67
CCDC88C-201ENST00000331194 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-201ENST00000331194 SPAARA0A1B0GVQ0 90 aa10.84□□□□□ -0.67
CCDC88C-201ENST00000331194 SERTM2A0A1B0GWG4 89 aa10.84□□□□□ -0.67
CCDC88C-201ENST00000331194 FBLL1A6NHQ2 334 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-201ENST00000331194 P01737 135 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms