RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 HIST1H2BHQ93079 126 aa12.96□□□□□ -0.33
HCFC1-201ENST00000310441 HIST1H2BNQ99877 126 aa12.96□□□□□ -0.33
HCFC1-201ENST00000310441 HIST1H2BMQ99879 126 aa12.96□□□□□ -0.33
HCFC1-201ENST00000310441 GPHA2Q96T91 129 aa12.96□□□□□ -0.34
HCFC1-201ENST00000310441 NCOR1P1Q9H4R4 102 aa12.96□□□□□ -0.34
HCFC1-201ENST00000310441 SAP25Q8TEE9 199 aa12.96□□□□□ -0.34
HCFC1-201ENST00000310441 REPIN1Q9BWE0 567 aaKnown RBP12.96□□□□□ -0.34
HCFC1-201ENST00000310441 SAA2-SAA4A0A096LPE2 208 aa12.96□□□□□ -0.34
HCFC1-201ENST00000310441 SAA2P0DJI9 122 aaPredicted RBP12.96□□□□□ -0.34
HCFC1-201ENST00000310441 ZNF415Q09FC8 603 aa12.96□□□□□ -0.34
HCFC1-201ENST00000310441 SPSB3Q6PJ21 355 aa12.96□□□□□ -0.34
HCFC1-201ENST00000310441 C2orf82Q6UX34 121 aa12.96□□□□□ -0.34
HCFC1-201ENST00000310441 IGHV3-66A0A0C4DH42 116 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 CD160O95971 181 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 ZNF883P0CG24 379 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 DSCR9P59020 149 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 FOXL1Q12952 345 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 KIF26AQ9ULI4 1882 aaPredicted RBP12.95□□□□□ -0.34
HCFC1-201ENST00000310441 IGHV2OR16-5A0A0B4J2B6 119 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 UBE2DNLQ8IWF7 75 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 MIR17HGQ75NE6 70 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 IGKV3D-20A0A0C4DH25 116 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 ZNF525Q8N782 197 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 AMELYQ99218 206 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 TMEM133Q9H2Q1 129 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 CEP192Q8TEP8 1941 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 MALRD1Q5VYJ5 2156 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 TRBV7-1A0A0A6YYK4 115 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 TFF2Q03403 129 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 ERCC8Q13216 396 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 C7orf69Q9H7B7 122 aa12.95□□□□□ -0.34
HCFC1-201ENST00000310441 TRAV5A0A0B4J249 113 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 HTN3P15516 51 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 PAX8Q06710 450 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 ST6GALNAC3Q8NDV1 305 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 LINC01590Q5TEZ4 76 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 COLCA1Q6ZS62 124 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 RTBDNQ9BSG5 229 aaPredicted RBP12.94□□□□□ -0.34
HCFC1-201ENST00000310441 A0A1B0GW64 132 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 IGLV3-21P80748 117 aaPredicted RBP12.94□□□□□ -0.34
HCFC1-201ENST00000310441 PCOLCEQ15113 449 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 TNFSF13O75888 250 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 CECR9P0C854 216 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 TRBV6-7A0A0A0MS04 114 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 TRAV1-1A0A0B4J248 108 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 ZIC3O60481 467 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 IGHV3-49A0A0A0MS15 119 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 KLF17Q5JT82 389 aaPredicted RBP12.94□□□□□ -0.34
HCFC1-201ENST00000310441 NEGR1Q7Z3B1 354 aa12.94□□□□□ -0.34
HCFC1-201ENST00000310441 MYMXA0A1B0GTQ4 84 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 C17orf98A8MV24 154 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 PRCDQ00LT1 54 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 RPRMLQ8N4K4 120 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 A0A0G2JK05 382 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 VCYO14598 125 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 CELA2AP08217 269 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 C17orf100A8MU93 164 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 TIMP3P35625 211 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 IGHV3OR16-13A0A075B7E8 117 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 IGHV3-74A0A0B4J1X5 117 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 ATP5G3P48201 142 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 IGHV3-35A0A0C4DH35 117 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 MPZP25189 248 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 ZP1P60852 638 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 RPL36AP83881 106 aaKnown RBP12.93□□□□□ -0.34
HCFC1-201ENST00000310441 RPL36ALQ969Q0 106 aaKnown RBP12.93□□□□□ -0.34
HCFC1-201ENST00000310441 GGTLC1Q9BX51 225 aa12.93□□□□□ -0.34
HCFC1-201ENST00000310441 RAMP1O60894 148 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 IGHV3-23P01764 117 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 UMODP07911 640 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 ZNF48Q96MX3 618 aaPredicted RBP12.92□□□□□ -0.34
HCFC1-201ENST00000310441 SMIM10L1P0DMW3 83 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 SMIM10Q96HG1 83 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 ZXDCQ2QGD7 858 aaPredicted RBP12.92□□□□□ -0.34
HCFC1-201ENST00000310441 TRBV20-1A0A075B6N2 111 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 EFNB3Q15768 340 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 PIN1P1O15428 100 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 HEPN1Q6WQI6 88 aa12.92□□□□□ -0.34
HCFC1-201ENST00000310441 SP7Q8TDD2 431 aaPredicted RBP12.92□□□□□ -0.34
HCFC1-201ENST00000310441 PSG8Q9UQ74 426 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 SP9P0CG40 484 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 FBLN5Q9UBX5 448 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 CHCHD2Q9Y6H1 151 aaPredicted RBP12.91□□□□□ -0.34
HCFC1-201ENST00000310441 SLC25A45Q8N413 288 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 RNASE6Q93091 150 aaKnown RBP12.91□□□□□ -0.34
HCFC1-201ENST00000310441 F8VVB4 439 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 F8VWA3 439 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 PSCAO43653 123 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 GZMBP10144 247 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 LYPD1Q8N2G4 141 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 WNT2P09544 360 aa12.91□□□□□ -0.34
HCFC1-201ENST00000310441 MORN2Q502X0 79 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 SLC25A28Q96A46 364 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 LINC00477Q96M19 166 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 TRBV24-1A0A075B6N3 115 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 IGFBP3P17936 291 aaPredicted RBP12.9□□□□□ -0.34
HCFC1-201ENST00000310441 SS18Q15532 418 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 TEX38Q6PEX7 206 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 LY96Q9Y6Y9 160 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 PATE3B3GLJ2 98 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms