RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PFN1P07737 140 aaKnown RBP4.42□□□□□ -1.7
SCN1A-201ENST00000303395 LINC00158P58513 81 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 PRCDQ00LT1 54 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 HILPDAQ9Y5L2 63 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 GPR179Q6PRD1 2367 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 TRAV8-6A0A0B4J262 113 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 C16orf97H3BN30 126 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 FOXS1O43638 330 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 CENPWQ5EE01 88 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 GVQW1Q8N7I0 195 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 THAP8Q8NA92 274 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 IFI27L2Q9H2X8 130 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 UNQ5815/PRO19632Q6UWF5 114 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 PLEKHB2Q96CS7 222 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 TRGV9Q99603 122 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 TCF20Q9UGU0 1960 aaKnown RBP4.41□□□□□ -1.7
SCN1A-201ENST00000303395 SBF1O95248 1867 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV3-43A0A0B4J1X8 118 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 FOXH1O75593 365 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 EFEMP2O95967 443 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV3-43DP0DP04 118 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 RPL27AP46776 148 aaKnown RBP4.41□□□□□ -1.7
SCN1A-201ENST00000303395 LILRA3Q8N6C8 439 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-201ENST00000303395 NKAPP1Q8N9T2 125 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 UBE2E2Q96LR5 201 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 IGKV3D-20A0A0C4DH25 116 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 CXCL1P09341 107 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 CD69Q07108 199 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 PGLYRP4Q96LB8 373 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 NABP2Q9BQ15 211 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM74BQ9NUR3 256 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 ELOVL5Q9NYP7 299 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 SHISA3A0PJX4 238 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 A8MWV9 139 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV3-13P01766 116 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV3-7P01780 117 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 PEBP1P30086 187 aaKnown RBP4.41□□□□□ -1.7
SCN1A-201ENST00000303395 KLF17Q5JT82 389 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-201ENST00000303395 LINC00312Q9Y6C7 94 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 FRMPD3Q5JV73 1810 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 FLG2Q5D862 2391 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-201ENST00000303395 PRR19A6NJB7 356 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 PAX4O43316 350 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 VWC2Q2TAL6 325 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 PPDPFLQ8WWR9 84 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 SPANXB1Q9NS25 103 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM14CQ9P0S9 112 aa4.41□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV2-70DA0A0C4DH43 119 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 K7ESM1 405 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 OCIAD2Q56VL3 154 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 UTF1Q5T230 341 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 OTPQ5XKR4 325 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 TEX45Q8NA69 505 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV3-20A0A0C4DH32 117 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 LEPROTO15243 131 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 ANKRD29Q8N6D5 301 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 RMI2Q96E14 147 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 KIAA1549Q9HCM3 1950 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 GAGE13Q4V321 117 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 CHCHD5Q9BSY4 110 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 MYO18BQ8IUG5 2567 aa4.4□□□□□ -1.7
SCN1A-201ENST00000303395 A0A0A6YYD4 124 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 IGKV1-8A0A0C4DH67 115 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 MLNRO43193 412 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 NTN1O95631 604 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 ARL14EPLP0DKL9 152 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 CFHR1Q03591 330 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 TRIP6Q15654 476 aaKnown RBP4.4□□□□□ -1.71
SCN1A-201ENST00000303395 SP6Q3SY56 376 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 LDLRAD2Q5SZI1 272 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 ABHD12Q8N2K0 398 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 OR10W1Q8NGF6 305 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 OR13A1Q8NGR1 328 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 HCFC1R1Q9NWW0 138 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 CCL26Q9Y258 94 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 DSCAMO60469 2012 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 IGHV2-26A0A0B4J1V2 119 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 PRR33A8MZF0 331 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 NDUFB8O95169 186 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 SELLP14151 372 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 CFHR2P36980 270 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 LGALS9BQ3B8N2 356 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 LGALS9CQ6DKI2 356 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 SRD5A1P18405 259 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 GAGE2BQ13066 116 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 DLL3Q9NYJ7 618 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 SERF1AO75920 110 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 MDS2Q8NDY4 140 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 TMEM167AQ8TBQ9 72 aa4.4□□□□□ -1.71
SCN1A-201ENST00000303395 M0R381 172 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 NDUFC2O95298 119 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF880Q6PDB4 577 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 PCNX3Q9H6A9 2034 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 COL4A4P53420 1690 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 APOHP02749 345 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 SLURP2P0DP57 97 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 CRYGSP22914 178 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 VDAC2P45880 294 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 AMN1Q8IY45 258 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 FOXQ1Q9C009 403 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms