RNA–Protein interactions for RNA: ENST00000295226.1

CCDC140-201, Transcript of coiled-coil domain containing 140, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC140, Length 1,699 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140-201ENST00000295226 FAM223BA6NKX1 122 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 C17orf112F2Z3M2 114 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 BRI3O95415 125 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 TRBV12-3P01733 135 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 ATF4P18848 351 aaPredicted RBP11.73□□□□□ -0.53
CCDC140-201ENST00000295226 TAGLN2P37802 199 aaKnown RBP11.73□□□□□ -0.53
CCDC140-201ENST00000295226 SOHLH1Q5JUK2 328 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 ACSM6Q6P461 480 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 SLC16A13Q7RTY0 426 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 FAM223AQ8IWN6 122 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 MYOZ3Q8TDC0 251 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 TMEM158Q8WZ71 300 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 ACY3Q96HD9 319 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 SMCO4Q9NRQ5 59 aa11.73□□□□□ -0.53
CCDC140-201ENST00000295226 UBE2L5PA0A1B0GUS4 154 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 CORTO00230 105 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 MPDU1O75352 247 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 NDUFS6O75380 124 aaKnown RBP11.72□□□□□ -0.53
CCDC140-201ENST00000295226 NPBWR1P48145 328 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 GAMTQ14353 236 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 RHEBQ15382 184 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 CLEC19AQ6UXS0 136 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 ZNF709Q8N972 641 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 NPIPB3Q92617 1050 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 USMG5Q96IX5 58 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 CCDC140Q96MF4 163 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 RSG1Q9BU20 258 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 RPRMQ9NS64 109 aa11.72□□□□□ -0.53
CCDC140-201ENST00000295226 SMCO3A2RU48 225 aa11.71□□□□□ -0.53
CCDC140-201ENST00000295226 F8W735 103 aaPredicted RBP11.71□□□□□ -0.53
CCDC140-201ENST00000295226 NUPL2O15504 423 aaKnown RBP11.71□□□□□ -0.53
CCDC140-201ENST00000295226 IFNA1P01562 189 aa11.71□□□□□ -0.53
CCDC140-201ENST00000295226 RND2P52198 227 aa11.71□□□□□ -0.53
CCDC140-201ENST00000295226 ZNF502Q8TBZ5 544 aa11.71□□□□□ -0.53
CCDC140-201ENST00000295226 TUBA4BQ9H853 241 aa11.71□□□□□ -0.53
CCDC140-201ENST00000295226 C21orf62Q9NYP8 219 aa11.71□□□□□ -0.53
CCDC140-201ENST00000295226 A0A0G2JLM5 398 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 OR2T8A6NH00 312 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 PPP5D1E7EU14 171 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 CLEC3BP05452 202 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 GPX4P36969 197 aaPredicted RBP11.71□□□□□ -0.54
CCDC140-201ENST00000295226 DEFB136Q30KP8 78 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 NSUN5P1Q3KNT7 163 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 Q56UQ5 140 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 VN1R17PQ8TDU5 208 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 EEF1AKMT3Q96AZ1 226 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 DUX3Q96PT4 197 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 MDFIQ99750 246 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 RFNGQ9Y644 331 aa11.71□□□□□ -0.54
CCDC140-201ENST00000295226 STAB1Q9NY15 2570 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 FGF7P21781 194 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 GPR183P32249 361 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 MFAP4P55083 255 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 KLHL30-AS1Q8NEE0 82 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 CACNG8Q8WXS5 425 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 SLC35E1Q96K37 410 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 UBE2E2Q96LR5 201 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 KCNIP2Q9NS61 270 aa11.7□□□□□ -0.54
CCDC140-201ENST00000295226 IGHV3-35A0A0C4DH35 117 aa11.69□□□□□ -0.54
CCDC140-201ENST00000295226 LOC102723971A0A1B0GUV8 181 aa11.69□□□□□ -0.54
CCDC140-201ENST00000295226 SRP19P09132 144 aaKnown RBP11.69□□□□□ -0.54
CCDC140-201ENST00000295226 CDX1P47902 265 aaPredicted RBP11.69□□□□□ -0.54
CCDC140-201ENST00000295226 CCL20P78556 96 aa11.69□□□□□ -0.54
CCDC140-201ENST00000295226 DLK1P80370 383 aa11.69□□□□□ -0.54
CCDC140-201ENST00000295226 ETFRF1Q6IPR1 90 aa11.69□□□□□ -0.54
CCDC140-201ENST00000295226 ZNF343Q6P1L6 599 aa11.69□□□□□ -0.54
CCDC140-201ENST00000295226 C8orf86Q6ZUL3 223 aa11.69□□□□□ -0.54
CCDC140-201ENST00000295226 RCC1LQ96I51 464 aaKnown RBP11.69□□□□□ -0.54
CCDC140-201ENST00000295226 IGKV1OR2-108A0A075B7D4 117 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 TRBV7-1A0A0A6YYK4 115 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 CTXND1A0A1B0GTU2 59 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 A0A1B0GV50 99 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 ADARB2-AS1A8MUL3 147 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 ICAM4Q14773 271 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 TMEM88Q6PEY1 159 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 C15orf54Q8N8G6 183 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 OR4X1Q8NH49 305 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 CHRDL1Q9BU40 450 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 ACTR3CQ9C0K3 210 aaPredicted RBP11.68□□□□□ -0.54
CCDC140-201ENST00000295226 SLC39A9Q9NUM3 307 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 WDR83OSQ9Y284 106 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 TSSC4Q9Y5U2 329 aaPredicted RBP11.68□□□□□ -0.54
CCDC140-201ENST00000295226 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.68□□□□□ -0.54
CCDC140-201ENST00000295226 MAP1LC3B2A6NCE7 125 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 FNDC10F2Z333 226 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 M0R036 132 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 GNG7O60262 68 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 LGALS1P09382 135 aaKnown RBP11.68□□□□□ -0.54
CCDC140-201ENST00000295226 BCL2P10415 239 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 FLI1Q01543 452 aaPredicted RBP11.68□□□□□ -0.54
CCDC140-201ENST00000295226 HAGHQ16775 308 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 ACOT6Q3I5F7 207 aaPredicted RBP11.68□□□□□ -0.54
CCDC140-201ENST00000295226 TIGITQ495A1 244 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 C12orf54Q6X4T0 127 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 TMEM116Q8NCL8 245 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 RARRES2Q99969 163 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 NPCDR1Q9BY65 106 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 MAP1LC3BQ9GZQ8 125 aa11.68□□□□□ -0.54
CCDC140-201ENST00000295226 WNK1Q9H4A3 2382 aa11.67□□□□□ -0.54
CCDC140-201ENST00000295226 IGKV1D-37A0A075B6S9 117 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms