RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 HILPDAQ9Y5L2 63 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 IGKV1OR2-108A0A075B7D4 117 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 IGHV3-72A0A0B4J1Y9 119 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 ACTL6BO94805 426 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 MOSP00540 346 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 BRS3P32247 399 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 PKIAP61925 76 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 EAF1Q96JC9 268 aaPredicted RBP13.4□□□□□ -0.26
CPSF4-201ENST00000292476 TMUB1Q9BVT8 246 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 TRAPPC1Q9Y5R8 145 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 TEP1Q99973 2627 aaKnown RBP13.4□□□□□ -0.27
CPSF4-201ENST00000292476 FLNAP21333 2647 aaKnown RBP13.39□□□□□ -0.27
CPSF4-201ENST00000292476 SLC25A17O43808 307 aa13.39□□□□□ -0.27
CPSF4-201ENST00000292476 C8orf88P0DMB2 117 aa13.39□□□□□ -0.27
CPSF4-201ENST00000292476 PSG5Q15238 335 aa13.39□□□□□ -0.27
CPSF4-201ENST00000292476 LHFPL4Q7Z7J7 247 aa13.39□□□□□ -0.27
CPSF4-201ENST00000292476 TMEM37Q8WXS4 190 aa13.39□□□□□ -0.27
CPSF4-201ENST00000292476 ACANP16112 2415 aa13.39□□□□□ -0.27
CPSF4-201ENST00000292476 RPL19P84098 196 aaKnown RBP13.38□□□□□ -0.27
CPSF4-201ENST00000292476 LOXL1Q08397 574 aaPredicted RBP13.38□□□□□ -0.27
CPSF4-201ENST00000292476 CFHR4Q92496 578 aa13.38□□□□□ -0.27
CPSF4-201ENST00000292476 SLC25A33Q9BSK2 321 aa13.38□□□□□ -0.27
CPSF4-201ENST00000292476 TRBV9A0A0B4J1U6 114 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 PSMB11A5LHX3 300 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 PGPEP1LA6NFU8 196 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 TSTD3H0UI37 97 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 K7EN84 100 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 NPFFO15130 113 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 FAM106CPP0CH98 169 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 SELENOTP62341 195 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 FAM209BQ5JX69 171 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 CDPF1Q6NVV7 123 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 PPP1R27Q86WC6 154 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 CIARTQ8N365 385 aaPredicted RBP13.37□□□□□ -0.27
CPSF4-201ENST00000292476 LINC01356Q8N9X3 169 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 OR1L4Q8NGR5 311 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 ZNF503Q96F45 646 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 ZNF430Q9H8G1 570 aaPredicted RBP13.37□□□□□ -0.27
CPSF4-201ENST00000292476 AURKAIP1Q9NWT8 199 aaPredicted RBP13.37□□□□□ -0.27
CPSF4-201ENST00000292476 SIGLEC9Q9Y336 463 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 HELTA6NFD8 242 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 CRYGBP07316 175 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 GNG4P50150 75 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 PRSS8Q16651 343 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 COX19Q49B96 90 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 LDLRAD2Q5SZI1 272 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 GBGT1Q8N5D6 347 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 THAP8Q8NA92 274 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 NPBQ8NG41 125 aa13.37□□□□□ -0.27
CPSF4-201ENST00000292476 A0A1W2PRD5 423 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 A0A1W2PRF3 423 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 A0A1W2PRM7 423 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 SMAD7O15105 426 aaKnown RBP13.36□□□□□ -0.27
CPSF4-201ENST00000292476 OR7C2O60412 319 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 SAA4P35542 130 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 EBI3Q14213 229 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 PLGLAQ15195 96 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 RPEL1Q2QD12 228 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 PVRIGQ6DKI7 326 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 OR10W1Q8NGF6 305 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 DNAJC4Q9NNZ3 241 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 OSTCQ9NRP0 149 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 C1RLQ9NZP8 487 aa13.36□□□□□ -0.27
CPSF4-201ENST00000292476 ARHGAP32A7KAX9 2087 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 CENPVL3A0A0U1RRI6 287 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 J3QLI3 93 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 NBR2O15453 112 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 GZMBP10144 247 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 BPIFB3P59826 476 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 ZNF90Q03938 601 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 HES1Q14469 280 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 MMDQ15546 238 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 ETFRF1Q6IPR1 90 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 RITA1Q96K30 269 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 SRSF8Q9BRL6 282 aaKnown RBP13.35□□□□□ -0.27
CPSF4-201ENST00000292476 C7orf69Q9H7B7 122 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 HIF1ANQ9NWT6 349 aa13.35□□□□□ -0.27
CPSF4-201ENST00000292476 IGHV1-69DA0A0B4J2H0 117 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 NDUFA3O95167 84 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 IGHV1-69P01742 117 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 COMPP49747 757 aaPredicted RBP13.34□□□□□ -0.27
CPSF4-201ENST00000292476 DEFA6Q01524 100 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 TIGITQ495A1 244 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 CENPWQ5EE01 88 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 FAM167A-AS1Q96KT0 104 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 SMR3AQ99954 134 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 V9GYV3 84 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 TCRBV4S1A1TA0A5B7 111 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 CGB1A6NKQ9 187 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 ISLRO14498 428 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 RPL27AP46776 148 aaKnown RBP13.34□□□□□ -0.27
CPSF4-201ENST00000292476 TAS2R60P59551 318 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 WT1-ASQ06250 92 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 MAPK1IP1LQ8NDC0 245 aa13.34□□□□□ -0.27
CPSF4-201ENST00000292476 A0A096LNT2 108 aa13.33□□□□□ -0.28
CPSF4-201ENST00000292476 GGTLC3B5MD39 225 aa13.33□□□□□ -0.28
CPSF4-201ENST00000292476 RNF223E7ERA6 249 aa13.33□□□□□ -0.28
CPSF4-201ENST00000292476 MT-ND6P03923 174 aa13.33□□□□□ -0.28
CPSF4-201ENST00000292476 CRYBB3P26998 211 aa13.33□□□□□ -0.28
CPSF4-201ENST00000292476 ERVFC1-1P60608 527 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms