RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ZNF462Q96JM2 2506 aa12.16□□□□□ -0.46
SF3B4-201ENST00000271628 WNK2Q9Y3S1 2297 aa12.16□□□□□ -0.46
SF3B4-201ENST00000271628 TRBV20OR9-2A0A075B6H5 130 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 IGKV1D-37A0A075B6S9 117 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 NPFFO15130 113 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 DDTP30046 118 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 SRSF1Q07955 248 aaKnown RBP eCLIP12.15□□□□□ -0.46
SF3B4-201ENST00000271628 SPATA31B1PQ5VZV4 182 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 MIR17HGQ75NE6 70 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 LINC00469Q8N7U9 141 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 SGMS2Q8NHU3 365 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 TRGV9Q99603 122 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 TRAPPC1Q9Y5R8 145 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 LY96Q9Y6Y9 160 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 ZFYVE26Q68DK2 2539 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 VPS13CQ709C8 3753 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 IGHV3-48P01763 117 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 BPIFB3P59826 476 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 PERPQ96FX8 193 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 TNFRSF19Q9NS68 423 aa12.15□□□□□ -0.46
SF3B4-201ENST00000271628 TRAV9-1A0A075B6T8 112 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 IGHV4-30-2A0A087WSY4 118 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 CENPVL3A0A0U1RRI6 287 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 SCO2A0A1W2PP80 73 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 PSMB11A5LHX3 300 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 C8orf88P0DMB2 117 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 ZNF90Q03938 601 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 C11orf52Q96A22 123 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 C14orf144Q96I85 54 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 AJUBAQ96IF1 538 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 UHRF2Q96PU4 802 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 AURKAIP1Q9NWT8 199 aaPredicted RBP12.14□□□□□ -0.47
SF3B4-201ENST00000271628 MRPL36Q9P0J6 103 aaKnown RBP12.14□□□□□ -0.47
SF3B4-201ENST00000271628 C9JCJ5 164 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 COX7A2P2O60397 106 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 CX3CL1P78423 397 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 TEX38Q6PEX7 206 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 REC114Q7Z4M0 266 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 OR10G8Q8NGN5 311 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 OCC1Q8TAD7 63 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 ARPC1AQ92747 370 aa12.14□□□□□ -0.47
SF3B4-201ENST00000271628 YTHDF2Q9Y5A9 579 aaKnown RBP12.14□□□□□ -0.47
SF3B4-201ENST00000271628 NPIPB5A8MRT5 1133 aa12.13□□□□□ -0.47
SF3B4-201ENST00000271628 YPEL3P61236 119 aaPredicted RBP12.13□□□□□ -0.47
SF3B4-201ENST00000271628 C10orf113Q5VZT2 155 aa12.13□□□□□ -0.47
SF3B4-201ENST00000271628 CRYBG3Q68DQ2 2970 aa12.13□□□□□ -0.47
SF3B4-201ENST00000271628 UTP20O75691 2785 aaKnown RBP12.13□□□□□ -0.47
SF3B4-201ENST00000271628 PGPEP1LA6NFU8 196 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 I3L2K1 104 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 OR7C2O60412 319 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 C19orf35Q6ZS72 473 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 PIP4P2Q8N4L2 257 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 GBGT1Q8N5D6 347 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 NOL4LQ96MY1 436 aaPredicted RBP12.12□□□□□ -0.47
SF3B4-201ENST00000271628 SLC25A16P16260 332 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 FBLN7Q53RD9 439 aa12.12□□□□□ -0.47
SF3B4-201ENST00000271628 FAM103A1Q9BTL3 118 aaKnown RBP12.12□□□□□ -0.47
SF3B4-201ENST00000271628 TTC9CQ8N5M4 171 aa12.11□□□□□ -0.47
SF3B4-201ENST00000271628 Q8N9W7 124 aa12.11□□□□□ -0.47
SF3B4-201ENST00000271628 RASL11BQ9BPW5 248 aa12.11□□□□□ -0.47
SF3B4-201ENST00000271628 PRO1933Q9H354 126 aa12.11□□□□□ -0.47
SF3B4-201ENST00000271628 THYN1Q9P016 225 aa12.11□□□□□ -0.47
SF3B4-201ENST00000271628 MED13LQ71F56 2210 aa12.11□□□□□ -0.47
SF3B4-201ENST00000271628 IGHV1-69DA0A0B4J2H0 117 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 IGHV1-69P01742 117 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 HLA-DRB1P01911 266 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 MSMBP08118 114 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 STXBP6Q8NFX7 210 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 IL36BQ9NZH7 164 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 EPG5Q9HCE0 2579 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 IGHV3-21A0A0B4J1V1 117 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 A1L4Q6 167 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 B4DSR2 109 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 PLP1P60201 277 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 IQCJQ1A5X6 159 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 PATE2Q6UY27 113 aa12.1□□□□□ -0.47
SF3B4-201ENST00000271628 A8MWP6 167 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 LBHQ53QV2 105 aaPredicted RBP12.09□□□□□ -0.47
SF3B4-201ENST00000271628 FAM120AOSQ5T036 256 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 RUSC1-AS1Q66K80 236 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 LINC00305Q7Z4B0 112 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 ZNF664Q8N3J9 261 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 ZNF503Q96F45 646 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 SVEP1Q4LDE5 3571 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 IGHV7-81A0A0B4J1V7 117 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 A0A1W2PRE2 83 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 ZNF705GA8MUZ8 300 aaPredicted RBP12.09□□□□□ -0.47
SF3B4-201ENST00000271628 K7EIM0 57 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 HYPMO75409 117 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 IGLC1P0CG04 106 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 ORM2P19652 201 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 GATA3P23771 443 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 OR5AU1Q8NGC0 362 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 NRGNQ92686 78 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 FAM167A-AS1Q96KT0 104 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 SLC25A2Q9BXI2 301 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 ZNF355PQ9NSJ1 428 aa12.09□□□□□ -0.47
SF3B4-201ENST00000271628 K7EN84 100 aa12.08□□□□□ -0.48
SF3B4-201ENST00000271628 ASPHD1Q5U4P2 390 aa12.08□□□□□ -0.48
SF3B4-201ENST00000271628 OR1B1Q8NGR6 318 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms