RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 H3BMQ9 156 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 RD3LP0DJH9 198 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 AKR1C4P17516 323 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 NPY1RP25929 384 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 CCR6P51684 374 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 SUPT4H1P63272 117 aaKnown RBP7.09□□□□□ -1.27
VPS41-201ENST00000265745 ETFRF1Q6IPR1 90 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 C16orf54Q6UWD8 224 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 LYZL2Q7Z4W2 148 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 TRPT1Q86TN4 253 aaKnown RBP7.09□□□□□ -1.27
VPS41-201ENST00000265745 NOXA1Q86UR1 476 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 STHQ8IWL8 128 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 C11orf45Q8TAV5 145 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 GLMPQ8WWB7 406 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 NPIPB3Q92617 1050 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 C11orf68Q9H3H3 251 aaKnown RBP7.09□□□□□ -1.27
VPS41-201ENST00000265745 MCUBQ9NWR8 336 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 HSPB7Q9UBY9 170 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 SHPKQ9UHJ6 478 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 U3KQ87 197 aa7.09□□□□□ -1.27
VPS41-201ENST00000265745 HELTA6NFD8 242 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 KNCNA6PVL3 124 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 DEFB4AO15263 64 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 IFNA10P01566 189 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 HNRNPCP07910 306 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS41-201ENST00000265745 ZNF688P0C7X2 276 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 EIF2B2P49770 351 aaKnown RBP7.08□□□□□ -1.28
VPS41-201ENST00000265745 AP2S1P53680 142 aaPredicted RBP7.08□□□□□ -1.28
VPS41-201ENST00000265745 NANOS2P60321 138 aaKnown RBP7.08□□□□□ -1.28
VPS41-201ENST00000265745 SMCO1Q147U7 214 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 USF2Q15853 346 aaPredicted RBP7.08□□□□□ -1.28
VPS41-201ENST00000265745 LGI3Q8N145 548 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 MCFD2Q8NI22 146 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 ACY3Q96HD9 319 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 RAB40CQ96S21 281 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 MFFQ9GZY8 342 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 ALMS1Q8TCU4 4167 aa7.08□□□□□ -1.28
VPS41-201ENST00000265745 BUB3O43684 328 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 TOMM40O96008 361 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 IFNA4P05014 189 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 IL4P05112 153 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 SPP1P10451 314 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 ANXA3P12429 323 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 ATP5IP56385 69 aaPredicted RBP7.07□□□□□ -1.28
VPS41-201ENST00000265745 DHRS2Q13268 280 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 KLF9Q13886 244 aaPredicted RBP7.07□□□□□ -1.28
VPS41-201ENST00000265745 TMEM41BQ5BJD5 291 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 MORN3Q6PF18 240 aaPredicted RBP7.07□□□□□ -1.28
VPS41-201ENST00000265745 Q8NAQ8 132 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 DTD1Q8TEA8 209 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 WDR12Q9GZL7 423 aaKnown RBP7.07□□□□□ -1.28
VPS41-201ENST00000265745 RBKSQ9H477 322 aa7.07□□□□□ -1.28
VPS41-201ENST00000265745 NOL3O60936 208 aaKnown RBP7.06□□□□□ -1.28
VPS41-201ENST00000265745 PITX3O75364 302 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 RBMY1A1P0DJD3 496 aaKnown RBP7.06□□□□□ -1.28
VPS41-201ENST00000265745 RBMY1CP0DJD4 496 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 PSG1P11464 419 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 C4BPBP20851 252 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 GPX4P36969 197 aaPredicted RBP7.06□□□□□ -1.28
VPS41-201ENST00000265745 SRPXP78539 464 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 RBMY1FQ15415 496 aaKnown RBP7.06□□□□□ -1.28
VPS41-201ENST00000265745 TMEM128Q5BJH2 165 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 PSMG4Q5JS54 123 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 ACTL10Q5JWF8 245 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 LGALS9CQ6DKI2 356 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 CSNK1G2-AS1Q8NCQ2 148 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 SEPSECSQ9HD40 501 aaKnown RBP7.06□□□□□ -1.28
VPS41-201ENST00000265745 NRN1Q9NPD7 142 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 FBXL17Q9UF56 701 aa7.06□□□□□ -1.28
VPS41-201ENST00000265745 IGKV1D-37A0A075B6S9 117 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 PIGBOS1A0A0B4J2F0 54 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 IGHV4-28A0A0C4DH34 117 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 ZNF705EA8MWA4 302 aaPredicted RBP7.05□□□□□ -1.28
VPS41-201ENST00000265745 FAM90A26D6RGX4 464 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 MIFP14174 115 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 FAUP35544 74 aaKnown RBP7.05□□□□□ -1.28
VPS41-201ENST00000265745 AP3S2P59780 193 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 SNRPD3P62318 126 aaKnown RBP7.05□□□□□ -1.28
VPS41-201ENST00000265745 GAMTQ14353 236 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 PYDC2Q56P42 97 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 TOMM5Q8N4H5 51 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 RPP25LQ8N5L8 163 aaKnown RBP7.05□□□□□ -1.28
VPS41-201ENST00000265745 LRTM2Q8N967 370 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 OR51G1Q8NGK1 321 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 OR1S1Q8NH92 325 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 TRIM63Q969Q1 353 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 RNF125Q96EQ8 232 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 HRH4Q9H3N8 390 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 V9GYH0 126 aa7.05□□□□□ -1.28
VPS41-201ENST00000265745 DUXBA0A1W2PPF3 345 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 ZFP92A6NM28 416 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 H3BMM0 161 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 SLC25A6P12236 298 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 ZNF90Q03938 601 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 SIGLEC15Q6ZMC9 328 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 TMED4Q7Z7H5 227 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 C2CD4CQ8TF44 421 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 SLC25A21Q9BQT8 299 aaPredicted RBP7.04□□□□□ -1.28
VPS41-201ENST00000265745 CLEC5AQ9NY25 188 aa7.04□□□□□ -1.28
VPS41-201ENST00000265745 TBC1D24Q9ULP9 559 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms