RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 ZNF343Q6P1L6 599 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 Q6ZRM9 215 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 P2RX4Q99571 388 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 RSG1Q9BU20 258 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 TNCP24821 2201 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 H3BUA1 57 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 TGOLN2O43493 480 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 IAPPP10997 89 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 S100A2P29034 98 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 NDUFA6P56556 154 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 LILRB2Q8N423 598 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 C4orf3Q8WVX3 66 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 PINX1Q96BK5 328 aaKnown RBP13.02□□□□□ -0.33
SDCBP-201ENST00000260130 URGCP-MRPS24S4R325 110 aa13.02□□□□□ -0.33
SDCBP-201ENST00000260130 ZFP92A6NM28 416 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 FAM90A26D6RGX4 464 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 YIF1AO95070 293 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 IFNA1P01562 189 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 METTL15P1P0C7V9 234 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 MYOD1P15172 320 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 IZUMO4Q1ZYL8 232 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 FAM90A2PQ658T7 463 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 COMMD5Q9GZQ3 224 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 DOK5Q9P104 306 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 TGIF2-C20orf24A0A0A6YYL0 155 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 TEX22C9J3V5 150 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 CYB5BO43169 146 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 BRI3O95415 125 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 IGKV1-5P01602 117 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 TRGV3P03979 118 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 OR9G9P0C7N8 305 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 MYCNOSP40205 109 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 TPPP2P59282 170 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 TMEM41BQ5BJD5 291 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 GGACTQ9BVM4 153 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 GNB4Q9HAV0 340 aa13.01□□□□□ -0.33
SDCBP-201ENST00000260130 GAR1Q9NY12 217 aaKnown RBP13.01□□□□□ -0.33
SDCBP-201ENST00000260130 LCN15Q6UWW0 184 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 TTC9CQ8N5M4 171 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 VAX2Q9UIW0 290 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 SEC14L6B5MCN3 397 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 CCL24O00175 119 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 DEFB136Q30KP8 78 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 WFDC9Q8NEX5 89 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 RCC1LQ96I51 464 aaKnown RBP13□□□□□ -0.33
SDCBP-201ENST00000260130 RAX2Q96IS3 184 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 DUX3Q96PT4 197 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 OR5B12Q96R08 314 aa13□□□□□ -0.33
SDCBP-201ENST00000260130 WDR61Q9GZS3 305 aaKnown RBP13□□□□□ -0.33
SDCBP-201ENST00000260130 ELOA3CA0A087WX78 387 aaPredicted RBP12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BKO60814 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BJP06899 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BOP23527 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BBP33778 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 RND2P52198 227 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BDP58876 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BCP62807 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 ARL16Q0P5N6 197 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 PMS2P11Q13670 270 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 ZNF726P1Q15940 193 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST2H2BEQ16778 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.99□□□□□ -0.33
SDCBP-201ENST00000260130 H2BFWTQ7Z2G1 175 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BHQ93079 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BNQ99877 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 HIST1H2BMQ99879 126 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 VSIRQ9H7M9 311 aa12.99□□□□□ -0.33
SDCBP-201ENST00000260130 CGB1A6NKQ9 187 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 SPANXN5Q5MJ07 72 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 HAPLN4Q86UW8 402 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 MRPL41Q8IXM3 137 aaKnown RBP12.98□□□□□ -0.33
SDCBP-201ENST00000260130 FAM210BQ96KR6 192 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 SDF2L1Q9HCN8 221 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 TIMM9Q9Y5J7 89 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 DMRT1Q9Y5R6 373 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 TEX50A0A1B0GTY4 177 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 MAP1LC3B2A6NCE7 125 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 CD33P20138 364 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 LINC00482Q8N8I6 264 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 OR11H1Q8NG94 326 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 MAP1LC3BQ9GZQ8 125 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 CTDSP1Q9GZU7 261 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 FKBP11Q9NYL4 201 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 PRNDQ9UKY0 176 aa12.98□□□□□ -0.33
SDCBP-201ENST00000260130 A0A0G2JLM5 398 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 NPIPB5A8MRT5 1133 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 PPP1R2P9O14990 202 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 TRGC2P03986 189 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 FGF8P55075 233 aaPredicted RBP12.97□□□□□ -0.33
SDCBP-201ENST00000260130 SLC38A11Q08AI6 406 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 OR1L8Q8NGR8 309 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 OR4C12Q96R67 309 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 QTRT1Q9BXR0 403 aaKnown RBP12.97□□□□□ -0.33
SDCBP-201ENST00000260130 ZMAT5Q9UDW3 170 aaKnown RBP12.97□□□□□ -0.33
SDCBP-201ENST00000260130 ZNF257Q9Y2Q1 563 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 OR51B2Q9Y5P1 312 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 CEBPZOSA8MTT3 80 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 IGHV3-11P01762 117 aa12.97□□□□□ -0.33
SDCBP-201ENST00000260130 LGALS1P09382 135 aaKnown RBP12.97□□□□□ -0.33
SDCBP-201ENST00000260130 AREGP15514 252 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms