RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 IFI27L1Q96BM0 104 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 VSIRQ9H7M9 311 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 NHP2Q9NX24 153 aaKnown RBP11.19□□□□□ -0.62
SF3A1-201ENST00000215793 DOCK6Q96HP0 2047 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 MALP21145 153 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 FOXL1Q12952 345 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 SIGLEC15Q6ZMC9 328 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 SLC25A20O43772 301 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 CMC4P56277 68 aaPredicted RBP11.18□□□□□ -0.62
SF3A1-201ENST00000215793 SMPXQ9UHP9 88 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 MED12Q93074 2177 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 TRBV6-6A0A0A6YYG2 114 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 TMEM14EPQ6UXP3 125 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 BEND2Q8NDZ0 799 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 SLC25A2Q9BXI2 301 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 LOC105371267A0A1B0GV96 52 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 C10orf55Q5SWW7 151 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 SLC25A15Q9Y619 301 aa11.18□□□□□ -0.62
SF3A1-201ENST00000215793 ABCA4P78363 2273 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 TRGV4A0A0C4DH28 118 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 TMEM178BH3BS89 294 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 UBE2CO00762 179 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 PPIFP30405 207 aaKnown RBP11.17□□□□□ -0.62
SF3A1-201ENST00000215793 SPSB3Q6PJ21 355 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 C1QL4Q86Z23 238 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 COL6A6A6NMZ7 2263 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 NPIPB5A8MRT5 1133 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 PSG1P11464 419 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 C15orf32Q32M92 178 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 TMEM200BQ69YZ2 307 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 TRGV9Q99603 122 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 PMS2P5A8MQ11 134 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 SELLP14151 372 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 TRAV5A0A0B4J249 113 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 CA1P00915 261 aaPredicted RBP11.17□□□□□ -0.62
SF3A1-201ENST00000215793 RALGAPA2Q2PPJ7 1873 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 CLDN16Q9Y5I7 305 aa11.17□□□□□ -0.62
SF3A1-201ENST00000215793 IGHV1-3A0A0C4DH29 117 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 RASL11AQ6T310 242 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 RPP25LQ8N5L8 163 aaKnown RBP11.16□□□□□ -0.62
SF3A1-201ENST00000215793 CYTL1Q9NRR1 136 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 CHTOPQ9Y3Y2 248 aaKnown RBP11.16□□□□□ -0.62
SF3A1-201ENST00000215793 MLNRO43193 412 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 IGKV1-5P01602 117 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 IGKCP01834 107 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 CD28P10747 220 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 HIST1H2BLQ99880 126 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 AGMATQ9BSE5 352 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 TPTE2P1Q5T6R2 138 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 GFI1BQ5VTD9 330 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 PGPEP1Q9NXJ5 209 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 SPOCK3Q9BQ16 436 aa11.16□□□□□ -0.62
SF3A1-201ENST00000215793 SLC25A39Q9BZJ4 359 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-201ENST00000215793 PNRC2Q9NPJ4 139 aaKnown RBP11.16□□□□□ -0.62
SF3A1-201ENST00000215793 DTX2Q86UW9 622 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 CHD5Q8TDI0 1954 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 LINC00587B1AMM8 73 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 LINC01551Q86U37 167 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 CD177Q8N6Q3 437 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 ORAOV1Q8WV07 137 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 MS4A6AQ9H2W1 248 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 ZNF815PA8K554 130 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 C20orf204Q6ZNR8 217 aa11.15□□□□□ -0.62
SF3A1-201ENST00000215793 SBF2Q86WG5 1849 aa11.15□□□□□ -0.63
SF3A1-201ENST00000215793 PAX2Q02962 417 aa11.15□□□□□ -0.63
SF3A1-201ENST00000215793 C9orf139Q6ZV77 190 aa11.15□□□□□ -0.63
SF3A1-201ENST00000215793 TCRAP04437 139 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 SEC11AP67812 179 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 VMO1Q7Z5L0 202 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 DERL1Q9BUN8 251 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 LY96Q9Y6Y9 160 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 PSME4Q14997 1843 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 GPR179Q6PRD1 2367 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 NOTCH3Q9UM47 2321 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 IGKV3D-20A0A0C4DH25 116 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 Q6ZS49 121 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 OR5A1Q8NGJ0 315 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 TRAV8-2A0A0B4J237 113 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 HOXA3O43365 443 aaPredicted RBP11.14□□□□□ -0.63
SF3A1-201ENST00000215793 TMEM86BQ8N661 226 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 MDS2Q8NDY4 140 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 COLCA2A8K830 154 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 CD33P20138 364 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 EVI2AP22794 236 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 C5orf64Q2M2E5 130 aa11.14□□□□□ -0.63
SF3A1-201ENST00000215793 M0R1W7 72 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 CLPSP04118 112 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 HSD52Q0P140 79 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 LY6DQ14210 128 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 MORN3Q6PF18 240 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-201ENST00000215793 MGST2Q99735 147 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 CHCHD5Q9BSY4 110 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 LINC00527Q9UJ94 153 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 MBD3L4A6NDZ8 208 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-201ENST00000215793 MBD3L3A6NE82 208 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-201ENST00000215793 MBD3L5A6NJ08 208 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-201ENST00000215793 OR9G4Q8NGQ1 327 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 MBD3L2Q8NHZ7 208 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-201ENST00000215793 B4DSR2 109 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 ZNF138P52744 262 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms