RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TPSG1Q9NRR2 321 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 EDC4Q6P2E9 1401 aaKnown RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 J3QQQ9 107 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 FKBP2P26885 142 aaKnown RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 CKS2P33552 79 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 UTP20O75691 2785 aaKnown RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 TM4SF5O14894 197 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 TNFP01375 233 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 MST1LQ2TV78 715 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF718Q3SXZ3 478 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 FAM222AQ5U5X8 452 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 NFAM1Q8NET5 270 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 PFN4Q8NHR9 129 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 AQP10Q96PS8 301 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 TCF20Q9UGU0 1960 aaKnown RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 A0A1B0GVT2 93 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 WDR38Q5JTN6 314 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF843Q8N446 348 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 LAMTOR3Q9UHA4 124 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ATAD5Q96QE3 1844 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 TRAV12-2A0A075B6T6 113 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 E9PLD3 99 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 COX6A1P12074 109 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 GUSBP11Q6P575 273 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF793Q6ZN11 406 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 DRAM1Q8N682 238 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 FANCD2OSQ96PS1 177 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 PDFQ9HBH1 243 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 PRR13Q9NZ81 148 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 TP53TG1Q9Y2A0 90 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 PYGO1Q9Y3Y4 419 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 A0A087WUU8 490 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 PIGBOS1A0A0B4J2F0 54 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 FOXI1Q12951 378 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 C10orf91Q5T1B1 145 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 OR5C1Q8NGR4 320 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF503Q96F45 646 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 IFI27L2Q9H2X8 130 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 E9PLN8 166 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 M0R1B8 84 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 GPX2P18283 190 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 WNT3AP56704 352 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 SPEM1Q8N4L4 309 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 FAM57AQ8TBR7 257 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 LSM10Q969L4 123 aaKnown RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 VKORC1Q9BQB6 163 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 HECW2Q9P2P5 1572 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 MAST1Q9Y2H9 1570 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 C3orf70A6NLC5 250 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 UQCRQO14949 82 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 CHST6Q9GZX3 395 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 MARF1Q9Y4F3 1742 aaKnown RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 RPL36A-HNRNPH2H7BZ11 118 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 DNAL4O96015 105 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 LINC00869P0C866 280 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 FXYD4P59646 89 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 NEGR1Q7Z3B1 354 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 BCL6BQ8N143 479 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 H3BMM0 161 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 PITX3O75364 302 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 C12orf74Q32Q52 190 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 OR11H6Q8NGC7 330 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 NRXN1Q9ULB1 1477 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 NDUFS5O43920 106 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 RPL30P62888 115 aaKnown RBP2.94□□□□□ -1.94
SCN1A-221ENST00000641996 DUSP5Q16690 384 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 LINC00336Q6ZUF6 198 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 MDP1Q86V88 176 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF414Q96IQ9 312 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ATP10BO94823 1461 aa2.94□□□□□ -1.94
SCN1A-221ENST00000641996 ATOX1O00244 68 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 PPP1R11O60927 126 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-221ENST00000641996 UBR5O95071 2799 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-221ENST00000641996 SCTP09683 121 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 GP9P14770 177 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 MP68P56378 58 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 FOXI2Q6ZQN5 318 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 GCSAMQ8N6F7 178 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 MYEOVQ96EZ4 313 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 EFCAB6Q5THR3 1501 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 GATA1P15976 413 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-221ENST00000641996 CDK5R1Q15078 307 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 GABARAPL3Q9BY60 117 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 ADGRL1O94910 1474 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 ASAH2BP0C7U1 165 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 KLF9Q13886 244 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-221ENST00000641996 CST6Q15828 149 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TP73-AS1Q9UF72 201 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 UNC13BO14795 1591 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 KIAA0586Q9BVV6 1533 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 GPATCH8Q9UKJ3 1502 aaKnown RBP2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TRIAP1O43715 76 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 SYNGR2O43760 224 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 CYP2G1PQ6ZSU1 146 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 UBE2WQ96B02 151 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 ADM5C9JUS6 153 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 UBE2AP49459 152 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 PLGLB1Q02325 96 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 SLC25A11Q02978 314 aaKnown RBP2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TNFAIP6P98066 277 aaPredicted RBP2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms