RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 A0A087WSZ3 146 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 TRPC5OSA6NMA1 111 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 EEF1E1-BLOC1S5C9J1V9 151 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 GOLGA8KD6RF30 607 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 C5orf67F2Z3F1 127 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 GOLGA8MH3BSY2 632 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 FAAHO00519 579 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 PFDN6O15212 129 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 SULT1B1O43704 296 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CALUO43852 315 aaPredicted RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 OR2B3O76000 313 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 DHFRP00374 187 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 COX5BP10606 129 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H1TP22492 207 aaPredicted RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BOP23527 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 RPS12P25398 132 aaKnown RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BBP33778 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 RNASE4P34096 147 aaKnown RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BDP58876 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ROMO1P60602 79 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CDC42P60953 191 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BCP62807 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 MED21Q13503 144 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 RSU1Q15404 277 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 GRK1Q15835 563 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST2H2BEQ16778 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ESRGQ1W209 222 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 LINC01554Q52M75 96 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 BRMS1LQ5PSV4 323 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST2H2BFQ5QNW6 126 aaPredicted RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CLVS2Q5SYC1 327 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 C6orf52Q5T4I8 152 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CST9Q5W186 159 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 LPCAT3Q6P1A2 487 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 LRRN1Q6UXK5 716 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 DPPA3Q6W0C5 159 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 Q6ZS49 121 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ZNF833PQ6ZTB9 187 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 FUNDC1Q8IVP5 155 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 IQCF2Q8IXL9 164 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 LINC00471Q8N535 108 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 PLPP5Q8NEB5 264 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 OR4E2Q8NGC2 313 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 OR10AC1Q8NH08 325 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 Q8TAT8 98 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 MRPL30Q8TCC3 161 aaKnown RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 WFDC5Q8TCV5 224 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 C4orf3Q8WVX3 66 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 PLAC4Q8WY50 150 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 RAB8BQ92930 207 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BHQ93079 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 TOMM6Q96B49 74 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CMTM5Q96DZ9 223 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ZC2HC1AQ96GY0 325 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 DIRAS2Q96HU8 199 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 PPP1R2P1Q96PQ5 205 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 TSPAN32Q96QS1 320 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BNQ99877 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BMQ99879 126 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CCDC94Q9BW85 323 aaPredicted RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 C20orf27Q9GZN8 174 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 COMMD5Q9GZQ3 224 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 TMEM126AQ9H061 195 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 TMEM133Q9H2Q1 129 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 OR51I1Q9H343 314 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 PSTPIP2Q9H939 334 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 TAS2R7Q9NYW3 318 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CHMP5Q9NZZ3 219 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 MRPL27Q9P0M9 148 aaKnown RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 C3orf18Q9UK00 162 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CFAP45Q9UL16 551 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 C15orf41Q9Y2V0 281 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 V9GYY5 206 aaPredicted RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 USH2AO75445 5202 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 MYO18AQ92614 2054 aaKnown RBP-0.19□□□□□ -2.44
VPS35-212ENST00000640313 BIRC6Q9NR09 4857 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 TOPBP1Q92547 1522 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 DNAH2Q9P225 4427 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CASP8AP2Q9UKL3 1982 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ABCC11Q96J66 1382 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ROBO3Q96MS0 1386 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 SETXQ7Z333 2677 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 WRNQ14191 1432 aaPredicted RBP eCLIP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 APC2O95996 2303 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 DNAH3Q8TD57 4116 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 APOBP04114 4563 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 CEP192Q8TEP8 1941 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 NEO1Q92859 1461 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 IGLV3-32A0A0A0MS00 114 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 TGIF2-C20orf24A0A0A6YYL0 155 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 EXOC1LA0A1B0GW35 172 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 TCRBV4S1A1TA0A5B7 111 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 PQLC2LA1A4F0 135 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 C7orf71A4D174 169 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 DPRXA6NFQ7 191 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SMIM9A6NGZ8 99 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 HSBP1L1C9JCN9 74 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 E7EUB6 86 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 M0QZ92 97 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SSNA1O43805 119 aa-0.2□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms