RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 OR5G3P0C626 314 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 C16orf82Q7Z2V1 217 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 MRPL41Q8IXM3 137 aaKnown RBP12.49□□□□□ -0.41
CLN3-251ENST00000636853 SRSF12Q8WXF0 261 aaKnown RBP12.49□□□□□ -0.41
CLN3-251ENST00000636853 ZNF503Q96F45 646 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 NEU1Q99519 415 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 BPESC1Q9GZL8 116 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 AURKAIP1Q9NWT8 199 aaPredicted RBP12.49□□□□□ -0.41
CLN3-251ENST00000636853 SPTAN1Q13813 2472 aaKnown RBP12.48□□□□□ -0.41
CLN3-251ENST00000636853 F6UZH7 168 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 PDLIM4P50479 330 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 MORN5Q5VZ52 161 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 ZNF114Q8NC26 417 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 RNF5Q99942 180 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 TECRQ9NZ01 308 aaKnown RBP12.48□□□□□ -0.41
CLN3-251ENST00000636853 COL12A1Q99715 3063 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 IGSF10Q6WRI0 2623 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 TCRBV4S1A1TA0A5B7 111 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 PSMB11A5LHX3 300 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 OR7C2O60412 319 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 GZMBP10144 247 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 HES1Q14469 280 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 PDZD11Q5EBL8 140 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 DYNAPQ8N1N2 210 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 OR4X1Q8NH49 305 aa12.48□□□□□ -0.41
CLN3-251ENST00000636853 TRAV5A0A0B4J249 113 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 PGPEP1LA6NFU8 196 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 OR10J4P0C629 311 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 HOXB4P17483 251 aaPredicted RBP12.47□□□□□ -0.41
CLN3-251ENST00000636853 PVRIGQ6DKI7 326 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 C1orf122Q6ZSJ8 110 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 THAP8Q8NA92 274 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 NECAP1Q8NC96 275 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 OR1P1Q8NH06 330 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 PRO1933Q9H354 126 aa12.47□□□□□ -0.41
CLN3-251ENST00000636853 CNIH1O95406 144 aa12.46□□□□□ -0.41
CLN3-251ENST00000636853 MOSP00540 346 aa12.46□□□□□ -0.41
CLN3-251ENST00000636853 AMBPP02760 352 aa12.46□□□□□ -0.41
CLN3-251ENST00000636853 PFN1P07737 140 aaKnown RBP12.46□□□□□ -0.41
CLN3-251ENST00000636853 BTF3P20290 206 aaKnown RBP12.46□□□□□ -0.41
CLN3-251ENST00000636853 EAF1Q96JC9 268 aaPredicted RBP12.46□□□□□ -0.41
CLN3-251ENST00000636853 TXNDC17Q9BRA2 123 aa12.46□□□□□ -0.41
CLN3-251ENST00000636853 C19orf24Q9BVV8 132 aa12.46□□□□□ -0.41
CLN3-251ENST00000636853 DNAJC4Q9NNZ3 241 aa12.46□□□□□ -0.41
CLN3-251ENST00000636853 F11RQ9Y624 299 aaKnown RBP12.46□□□□□ -0.41
CLN3-251ENST00000636853 CACNA1BQ00975 2339 aa12.46□□□□□ -0.41
CLN3-251ENST00000636853 OVOL3O00110 214 aa12.46□□□□□ -0.42
CLN3-251ENST00000636853 NBR2O15453 112 aa12.46□□□□□ -0.42
CLN3-251ENST00000636853 CRYGCP07315 174 aa12.46□□□□□ -0.42
CLN3-251ENST00000636853 PAX2Q02962 417 aa12.46□□□□□ -0.42
CLN3-251ENST00000636853 ETFRF1Q6IPR1 90 aa12.46□□□□□ -0.42
CLN3-251ENST00000636853 KIR3DL3Q8N743 410 aa12.46□□□□□ -0.42
CLN3-251ENST00000636853 SIRPDQ9H106 197 aa12.46□□□□□ -0.42
CLN3-251ENST00000636853 ABCA1O95477 2261 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 COX7A2P2O60397 106 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 C8orf88P0DMB2 117 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 TAS2R45P59539 299 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 PATE2Q6UY27 113 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 LINC01551Q86U37 167 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 UHRF2Q96PU4 802 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 TMEM167BQ9NRX6 74 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 TNFRSF19Q9NS68 423 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 TRBV20OR9-2A0A075B6H5 130 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 LMO4P61968 165 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 NUTF2P61970 127 aaKnown RBP12.45□□□□□ -0.42
CLN3-251ENST00000636853 PQLC2Q6ZP29 291 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 FAM103A1Q9BTL3 118 aaKnown RBP12.45□□□□□ -0.42
CLN3-251ENST00000636853 SLC25A2Q9BXI2 301 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 GSX1Q9H4S2 264 aaPredicted RBP12.45□□□□□ -0.42
CLN3-251ENST00000636853 PPP1R14DQ9NXH3 145 aa12.45□□□□□ -0.42
CLN3-251ENST00000636853 IGHV2-70DA0A0C4DH43 119 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 H7BYZ3 331 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 IGHV4-39P01824 125 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 C10orf113Q5VZT2 155 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 ZNF664Q8N3J9 261 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 FAM167A-AS1Q96KT0 104 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 MRPL32Q9BYC8 188 aaKnown RBP12.44□□□□□ -0.42
CLN3-251ENST00000636853 TOX4O94842 621 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 HNF1AP20823 631 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 FAM3BP58499 235 aaPredicted RBP12.44□□□□□ -0.42
CLN3-251ENST00000636853 NPBQ8NG41 125 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 ELOVL1Q9BW60 279 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 WNT10AQ9GZT5 417 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 ZNF355PQ9NSJ1 428 aa12.44□□□□□ -0.42
CLN3-251ENST00000636853 CORTO00230 105 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 TCAPO15273 167 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 NDUFA3O95167 84 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 SELENOTP62341 195 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 CLEC12BQ2HXU8 276 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 OR5AU1Q8NGC0 362 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 OR1L4Q8NGR5 311 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 LPAR2Q9HBW0 351 aa12.43□□□□□ -0.42
CLN3-251ENST00000636853 ORM2P19652 201 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 GALR1P47211 349 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 FXYD3Q14802 87 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 TMEM116Q8NCL8 245 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 OR2T10Q8NGZ9 312 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 C22orf15Q8WYQ4 148 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 VPS13CQ709C8 3753 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 PPP5D1E7EU14 171 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms