RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 HLA-DQB1P01920 261 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 UMODP07911 640 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 ZP1P60852 638 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 ZNF124Q15973 351 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 C3orf36Q3SXR2 165 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 SAMD5Q5TGI4 173 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 COLCA1Q6ZS62 124 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 LYZL2Q7Z4W2 148 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 FOXA2Q9Y261 457 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-212ENST00000636194 VCYO14598 125 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 FBLN7Q53RD9 439 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 Q6ZS52 159 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 C14orf144Q96I85 54 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 RBM38Q9H0Z9 239 aaKnown RBP5.1□□□□□ -1.59
SCN1A-212ENST00000636194 GAGE7O76087 117 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 GAGE12FP0CL80 117 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 GAGE12GP0CL81 117 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 GAGE12IP0CL82 117 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 SIGLEC15Q6ZMC9 328 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 Q71RC1 249 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-212ENST00000636194 WFDC6Q9BQY6 131 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 MGAMO43451 1857 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 TRAV12-1A0A0B4J245 112 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 HIGD1CA8MV81 97 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 HOXB4P17483 251 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-212ENST00000636194 TMEM240Q5SV17 173 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 CD300LDQ6UXZ3 194 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 TRGV1A0A0A0MS02 117 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 RIPPLY2Q5TAB7 128 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 GVQW1Q8N7I0 195 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 RCHY1Q96PM5 261 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 SIGLEC5O15389 551 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 ATP5L2Q7Z4Y8 100 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 CCL4L1Q8NHW4 92 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 OR2H2O95918 312 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 PRB2P02812 416 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-212ENST00000636194 EVI2AP22794 236 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 KLRD1Q13241 179 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 CLEC19AQ6UXS0 136 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 SPTSSBQ8NFR3 76 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 CCSMST1Q4G0I0 132 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 FAM27BQ5VT28 67 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 NEGR1Q7Z3B1 354 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 ITLN1Q8WWA0 313 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 CRIM1Q9NZV1 1036 aa5.1□□□□□ -1.59
SCN1A-212ENST00000636194 IGHV5-10-1A0A0J9YXX1 117 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 LDLRAD1Q5T700 205 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 RPUSD1Q9UJJ7 312 aaKnown RBP5.09□□□□□ -1.59
SCN1A-212ENST00000636194 A0A1W2PPE3 182 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 C3AR1Q16581 482 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 CAMTA1Q9Y6Y1 1673 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 IGHG2P01859 326 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 MYF5P13349 255 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 PVRIGQ6DKI7 326 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 MYEOVQ96EZ4 313 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 SMIM8Q96KF7 97 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 DUSP15Q9H1R2 295 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-212ENST00000636194 KLF5Q13887 457 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-212ENST00000636194 C9orf40Q8IXQ3 194 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 PLCH1Q4KWH8 1693 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 TMEM8BA6NDV4 472 aa5.09□□□□□ -1.59
SCN1A-212ENST00000636194 PLXNA3P51805 1871 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 EFEMP2O95967 443 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 GFI1BQ5VTD9 330 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 MCRIP2Q9BUT9 160 aaKnown RBP5.09□□□□□ -1.6
SCN1A-212ENST00000636194 LRP6O75581 1613 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3-49A0A0A0MS15 119 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 WNT2P09544 360 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 PEBP1P30086 187 aaKnown RBP5.09□□□□□ -1.6
SCN1A-212ENST00000636194 PRCDQ00LT1 54 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 SRSF7Q16629 238 aaKnown RBP eCLIP5.09□□□□□ -1.6
SCN1A-212ENST00000636194 KLF17Q5JT82 389 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-212ENST00000636194 FGFRL1Q8N441 504 aa5.09□□□□□ -1.6
SCN1A-212ENST00000636194 NBR2O15453 112 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 HSD52Q0P140 79 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 LCN12Q6JVE5 192 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 OR11H6Q8NGC7 330 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 DMRT1Q9Y5R6 373 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3OR16-10A0A075B7F0 116 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 SPINK8P0C7L1 97 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 CD300EQ496F6 205 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-212ENST00000636194 FAM90A1Q86YD7 464 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 MUC6Q6W4X9 2439 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 PTPRFP10586 1907 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 SPSB3Q6PJ21 355 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 ALKAL1Q6UXT8 129 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 FBLIM1Q8WUP2 373 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 Q9H3A6 140 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 RETNQ9HD89 108 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 WBP1LQ9NX94 342 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 SOCS1O15524 211 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 IL18BPO95998 194 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 PAX8Q06710 450 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 PRIMA1Q86XR5 153 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 LILRA3Q8N6C8 439 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-212ENST00000636194 NPIPB3Q92617 1050 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 NLRC5Q86WI3 1866 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 ZNF462Q96JM2 2506 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 TRBV7-1A0A0A6YYK4 115 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 EGR4Q05215 589 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms