RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 SIGLECL1Q8N7X8 197 aa-1.09□□□□□ -2.58
SCN1A-211ENST00000635893 SVEP1Q4LDE5 3571 aa-1.09□□□□□ -2.58
SCN1A-211ENST00000635893 PIK3R4Q99570 1358 aa-1.09□□□□□ -2.58
SCN1A-211ENST00000635893 POLQO75417 2590 aa-1.09□□□□□ -2.58
SCN1A-211ENST00000635893 UNC13CQ8NB66 2214 aa-1.09□□□□□ -2.58
SCN1A-211ENST00000635893 F8P00451 2351 aa-1.1□□□□□ -2.58
SCN1A-211ENST00000635893 VWFP04275 2813 aa-1.1□□□□□ -2.58
SCN1A-211ENST00000635893 DNAH3Q8TD57 4116 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 ABCA13Q86UQ4 5058 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 IGLV3-32A0A0A0MS00 114 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 CCL4P13236 92 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 PTMSP20962 102 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 CAV1Q03135 178 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 PPP1R1AQ13522 171 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 RPL22L1Q6P5R6 122 aaKnown RBP-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 ST6GALNAC3Q8NDV1 305 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 TMEM161BQ8NDZ6 487 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 OR13D1Q8NGV5 346 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 CNBD2Q96M20 576 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 WDR61Q9GZS3 305 aaKnown RBP-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 OR51V1Q9H2C8 321 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 ORMDL1Q9P0S3 153 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 SLC35A3Q9Y2D2 325 aa-1.1□□□□□ -2.59
SCN1A-211ENST00000635893 MYO3BQ8WXR4 1341 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 DSPP15924 2871 aaKnown RBP-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 MKRN2OSH3BPM6 223 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 AHSA1O95433 338 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 TPM2P07951 284 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 CCDC172P0C7W6 258 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 RBM3P98179 157 aaKnown RBP-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 GRK1Q15835 563 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 FBXO48Q5FWF7 155 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 PLEKHG7Q6ZR37 379 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 COPS6Q7L5N1 327 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 KLK6Q92876 244 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 GPR146Q96CH1 333 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 LINC00052Q96N35 136 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 V9GYY5 206 aaPredicted RBP-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 MUC17Q685J3 4493 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 WNK1Q9H4A3 2382 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 PKHD1L1Q86WI1 4243 aa-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 NIPBLQ6KC79 2804 aaeCLIP-1.11□□□□□ -2.59
SCN1A-211ENST00000635893 BCL9O00512 1426 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 RSU1Q15404 277 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 ASB16-AS1Q495Z4 193 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 SLC51BQ86UW2 128 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 CRLF3Q8IUI8 442 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 LINC00301Q8NCQ3 95 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 DIRAS2Q96HU8 199 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 C6orf62Q9GZU0 229 aaPredicted RBP-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 WFDC10AQ9H1F0 79 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 POLR1DQ9Y2S0 133 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 CHD3Q12873 2000 aaKnown RBP-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 CACNA1HO95180 2353 aa-1.12□□□□□ -2.59
SCN1A-211ENST00000635893 MYO18BQ8IUG5 2567 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 USP9XQ93008 2570 aaPredicted RBP-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 TRAV9-1A0A075B6T8 112 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 TOX3O15405 576 aaPredicted RBP-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 HMMRO75330 724 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 UGT2B7P16662 529 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 CDC34P49427 236 aaPredicted RBP-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 ESRGQ1W209 222 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 Q86TA4 180 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 CD302Q8IX05 232 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 HIST3H2BBQ8N257 126 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 OR52R1Q8NGF1 315 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 DHRS9Q9BPW9 319 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 FAM96AQ9H5X1 160 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 FANCMQ8IYD8 2048 aa-1.13□□□□□ -2.59
SCN1A-211ENST00000635893 KDM6BO15054 1643 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 TCRBV4S1A1TA0A5B7 111 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 ZNF727A8MUV8 499 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 ZNF879B4DU55 563 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 APOA1P02647 267 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 HBA1P69905 142 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 COQ5Q5HYK3 327 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 BRMS1LQ5PSV4 323 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 Q6ZS49 121 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 DEFB125Q8N687 156 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 TEX47Q8TBZ9 253 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 OR51I2Q9H344 312 aa-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 TNRC18O15417 2968 aaPredicted RBP-1.14□□□□□ -2.59
SCN1A-211ENST00000635893 PLECQ15149 4684 aaKnown RBP-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 BUB1B-PAK6H3BSN5 160 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 BIRC5O15392 142 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 CD2P06729 351 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 TNFAIP8L2Q6P589 184 aaPredicted RBP-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 COMMD7Q86VX2 200 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 OR8D4Q8NGM9 314 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 OR13C4Q8NGS5 318 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 MRPL30Q8TCC3 161 aaKnown RBP-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 TMEM138Q9NPI0 162 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 ERGIC3Q9Y282 383 aa-1.15□□□□□ -2.59
SCN1A-211ENST00000635893 CECR2Q9BXF3 1484 aa-1.16□□□□□ -2.59
SCN1A-211ENST00000635893 TAF1LQ8IZX4 1826 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 TRAV23DV6A0A075B6W5 121 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 EVPLLA8MZ36 301 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 F8VZ95 297 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 H3BRM9 83 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 DHFRP00374 187 aa-1.16□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms