RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 COMPP49747 757 aaPredicted RBP10.25□□□□□ -0.77
LINC00540-203ENST00000631321 TCF15Q12870 199 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 SIGLECL1Q8N7X8 197 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 GRAMD2BQ96HH9 432 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 CBLN4Q9NTU7 201 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 SERTAD4Q9NUC0 356 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 E7EQL1 145 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 RAB4AP20338 218 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 CDKN1AP38936 164 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 NUTF2P61970 127 aaKnown RBP10.25□□□□□ -0.77
LINC00540-203ENST00000631321 TMEM183BQ1AE95 376 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 MRPL54Q6P161 138 aaKnown RBP10.25□□□□□ -0.77
LINC00540-203ENST00000631321 GFRALQ6UXV0 394 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 LINC00305Q7Z4B0 112 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 FAM168AQ92567 244 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 PERPQ96FX8 193 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 KCNS1Q96KK3 526 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 C7orf69Q9H7B7 122 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 ZNF292O60281 2723 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 M0R143 59 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 REG1AP05451 166 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 SLC35B1P78383 322 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 TMEM116Q8NCL8 245 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 SMIM12Q96EX1 92 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 DYNLRB1Q9NP97 96 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 NGBQ9NPG2 151 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 TNFRSF19Q9NS68 423 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 FBXL7Q9UJT9 491 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 KLF12Q9Y4X4 402 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 LAMA5O15230 3695 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 A0A1W2PS18 150 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 IGHV3-48P01763 117 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 APCSP02743 223 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 MFAP2P55001 183 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 KIAA1644Q3SXP7 199 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 Q8N976 141 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 NHLRC2Q8NBF2 726 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 CHRDL1Q9BU40 450 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 ZNF331Q9NQX6 463 aaPredicted RBP10.24□□□□□ -0.77
LINC00540-203ENST00000631321 ZNF586Q9NXT0 402 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 EPDR1Q9UM22 224 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 BSNQ9UPA5 3926 aa10.24□□□□□ -0.77
LINC00540-203ENST00000631321 MGAQ8IWI9 3026 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 CA1P00915 261 aaPredicted RBP10.23□□□□□ -0.77
LINC00540-203ENST00000631321 SRIP30626 198 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 RPL27AP46776 148 aaKnown RBP10.23□□□□□ -0.77
LINC00540-203ENST00000631321 TBR1Q16650 682 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 TDRG1Q3Y452 100 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 RUSC1-AS1Q66K80 236 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 NUDT10Q8NFP7 164 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 NUDT11Q96G61 164 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 RNF114Q9Y508 228 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 TRAV34A0A0B4J273 112 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 IGHV1-69-2A0A0G2JMI3 117 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 ZNF253O75346 499 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 IGLV1-47P01700 117 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 PLP1P60201 277 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 RCHY1Q96PM5 261 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 MIEN1Q9BRT3 115 aa10.23□□□□□ -0.77
LINC00540-203ENST00000631321 TBL2Q9Y4P3 447 aaKnown RBP10.23□□□□□ -0.77
LINC00540-203ENST00000631321 ENSAO43768 121 aaKnown RBP10.22□□□□□ -0.77
LINC00540-203ENST00000631321 ZNF324O75467 553 aaPredicted RBP10.22□□□□□ -0.77
LINC00540-203ENST00000631321 CASP6P55212 293 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 SSBP3Q9BWW4 388 aaPredicted RBP10.22□□□□□ -0.77
LINC00540-203ENST00000631321 NRN1Q9NPD7 142 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 MRPL27Q9P0M9 148 aaKnown RBP10.22□□□□□ -0.77
LINC00540-203ENST00000631321 SH3BGRL2Q9UJC5 107 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 SIGLEC9Q9Y336 463 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 CEP250Q9BV73 2442 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 IGHV2-26A0A0B4J1V2 119 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 IGHV3-72A0A0B4J1Y9 119 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 CORTO00230 105 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 MOSP00540 346 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 HCP5Q6MZN7 132 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 ZNF841Q6ZN19 808 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 NUP35Q8NFH5 326 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 VN1R17PQ8TDU5 208 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 TSKUQ8WUA8 353 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 C22orf15Q8WYQ4 148 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 NEU1Q99519 415 aa10.22□□□□□ -0.77
LINC00540-203ENST00000631321 SMG1Q96Q15 3661 aaKnown RBP10.22□□□□□ -0.77
LINC00540-203ENST00000631321 NAV3Q8IVL0 2385 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 ROS1P08922 2347 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 B9A039 149 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 HYPMO75409 117 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 PLAUP00749 431 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 HIST1H1EP10412 219 aaKnown RBP10.21□□□□□ -0.77
LINC00540-203ENST00000631321 ORM2P19652 201 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 APOBEC3AP31941 199 aaPredicted RBP10.21□□□□□ -0.77
LINC00540-203ENST00000631321 AMTP48728 403 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 PRRX1P54821 245 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 GNG5P63218 68 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 SLAQ13239 276 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 GDF5OSQ5U4N7 250 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 PRSS33Q8NF86 280 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 OR1B1Q8NGR6 318 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 VAMP8Q9BV40 100 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 MLST8Q9BVC4 326 aa10.21□□□□□ -0.77
LINC00540-203ENST00000631321 RALYQ9UKM9 306 aaKnown RBP10.21□□□□□ -0.77
LINC00540-203ENST00000631321 M0QZK8 103 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms