RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 NIPSNAP3BQ9BS92 247 aa11.15□□□□□ -0.62
PDLIM3-213ENST00000629667 YTHDF1Q9BYJ9 559 aaKnown RBP11.15□□□□□ -0.62
PDLIM3-213ENST00000629667 SEPSECSQ9HD40 501 aaKnown RBP11.15□□□□□ -0.62
PDLIM3-213ENST00000629667 NRN1Q9NPD7 142 aa11.15□□□□□ -0.62
PDLIM3-213ENST00000629667 TEX48A0A1B0GUV7 120 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 ZNF705FA8MVS1 300 aaPredicted RBP11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 P0C879 139 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 ZNF705DP0CH99 300 aaPredicted RBP11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 ZNF705BP0CI00 300 aaPredicted RBP11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 HLA-DRB4P13762 266 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 HTN3P15516 51 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 NEDD8Q15843 81 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 TP53RKQ96S44 253 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 DKK2Q9UBU2 259 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 RFNGQ9Y644 331 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 HLA-DRB4X5D2U9 266 aa11.14□□□□□ -0.63
PDLIM3-213ENST00000629667 C16orf90A8MZG2 172 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 IGKV3-20P01619 116 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 IL4P05112 153 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 IGLC1P0CG04 106 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 PI3P19957 117 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 OR10J1P30954 320 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 RCVRNP35243 200 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 TGFBR1P36897 503 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 PIGPP57054 158 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 FXYD7P58549 80 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 YPEL3P61236 119 aaPredicted RBP11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 RND3P61587 244 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 DHODHQ02127 395 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 TRIM16LQ309B1 348 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 BSXQ3C1V8 233 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 FAM222AQ5U5X8 452 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 SIGLEC15Q6ZMC9 328 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 RNASE11Q8TAA1 199 aaKnown RBP11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 RRNAD1Q96FB5 475 aaKnown RBP11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 ZNF486Q96H40 463 aaPredicted RBP11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 SCPEP1Q9HB40 452 aa11.13□□□□□ -0.63
PDLIM3-213ENST00000629667 C3orf85A0A1B0GTC6 90 aa11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 SMIM31A0A1B0GVY4 71 aa11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 RPS19P39019 145 aaKnown RBP11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 HTR2BP41595 481 aa11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 NKX2-1P43699 371 aaPredicted RBP11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 RND2P52198 227 aa11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 USF2Q15853 346 aaPredicted RBP11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 PRSS54Q6PEW0 395 aa11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 SNX29P2Q8IUI4 249 aa11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 Q9H521 79 aa11.12□□□□□ -0.63
PDLIM3-213ENST00000629667 M0QYG6 137 aa11.11□□□□□ -0.63
PDLIM3-213ENST00000629667 BUB3O43684 328 aa11.11□□□□□ -0.63
PDLIM3-213ENST00000629667 GSTZ1O43708 216 aaPredicted RBP11.11□□□□□ -0.63
PDLIM3-213ENST00000629667 SLC25A4P12235 298 aa11.11□□□□□ -0.63
PDLIM3-213ENST00000629667 GDF5OSQ5U4N7 250 aa11.11□□□□□ -0.63
PDLIM3-213ENST00000629667 MAPKAPK5-AS1Q8N8E1 139 aa11.11□□□□□ -0.63
PDLIM3-213ENST00000629667 TMED3Q9Y3Q3 217 aa11.11□□□□□ -0.63
PDLIM3-213ENST00000629667 CDK2AP2O75956 126 aa11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 SPCS3P61009 180 aa11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 OXA1LQ15070 435 aa11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 SP6Q3SY56 376 aa11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 TMEM88Q6PEY1 159 aa11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 RNASEH2CQ8TDP1 164 aaKnown RBP11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 HEYLQ9NQ87 328 aaPredicted RBP11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 COPZ2Q9P299 210 aa11.1□□□□□ -0.63
PDLIM3-213ENST00000629667 A0A0G2JRQ6 117 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 RD3LP0DJH9 198 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 DEFB1P60022 68 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 TNP2Q05952 138 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 C2orf83Q53S99 150 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 ETFRF1Q6IPR1 90 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 OR4B1Q8NGF8 309 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 LINC00052Q96N35 136 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 SAV1Q9H4B6 383 aaPredicted RBP11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 COMMD3Q9UBI1 195 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 GOLT1BQ9Y3E0 138 aa11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 YTHDF2Q9Y5A9 579 aaKnown RBP11.09□□□□□ -0.63
PDLIM3-213ENST00000629667 TOMM40O96008 361 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 HBE1P02100 147 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 APOA1P02647 267 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 UCP1P25874 307 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 ID1P41134 155 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 FAM3BP58499 235 aaPredicted RBP11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 LSM3P62310 102 aaKnown RBP11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 RNASE10Q5GAN6 216 aaKnown RBP11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 FOXI2Q6ZQN5 318 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 LHFPL1Q86WI0 220 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 ZNF709Q8N972 641 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 CCDC71LQ8N9Z2 235 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 SLC24A4Q8NFF2 622 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 OR52E5Q8NH55 327 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 NPIPB3Q92617 1050 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 ACY3Q96HD9 319 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 C7orf50Q9BRJ6 194 aaKnown RBP11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 ATG101Q9BSB4 218 aa11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.08□□□□□ -0.64
PDLIM3-213ENST00000629667 LRP1BQ9NZR2 4599 aa11.07□□□□□ -0.64
PDLIM3-213ENST00000629667 LOC102723971A0A1B0GUV8 181 aa11.07□□□□□ -0.64
PDLIM3-213ENST00000629667 NUP62P37198 522 aaPredicted RBP11.07□□□□□ -0.64
PDLIM3-213ENST00000629667 DAD1P61803 113 aa11.07□□□□□ -0.64
PDLIM3-213ENST00000629667 FAM219AQ8IW50 185 aa11.07□□□□□ -0.64
PDLIM3-213ENST00000629667 ARRDC1Q8N5I2 433 aa11.07□□□□□ -0.64
PDLIM3-213ENST00000629667 C15orf53Q8NAA6 179 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms