RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 HTD2P86397 168 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 COL10A1Q03692 680 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 SLC38A11Q08AI6 406 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 KPRPQ5T749 579 aaPredicted RBP3.81□□□□□ -1.8
LINC00550-201ENST00000629293 ZNF66Q6ZN08 573 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 IQCF2Q8IXL9 164 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 FAM24BQ8N5W8 94 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 OR13A1Q8NGR1 328 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 SCGB1C1Q8TD33 95 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 DPF1Q92782 380 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 ASCL2Q99929 193 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 AGMATQ9BSE5 352 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 KRTAP17-1Q9BYP8 105 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 LINC00527Q9UJ94 153 aa3.81□□□□□ -1.8
LINC00550-201ENST00000629293 RBM7Q9Y580 266 aaKnown RBP3.81□□□□□ -1.8
LINC00550-201ENST00000629293 PUS1Q9Y606 427 aaKnown RBP eCLIP3.81□□□□□ -1.8
LINC00550-201ENST00000629293 CXorf65A6NEN9 183 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 IGKV1D-33P01593 117 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 IGKV1-33P01594 117 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 SSTR5P35346 364 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 G6PCP35575 357 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 GLIPR1P48060 266 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 SNRPEP62304 92 aaKnown RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 DLK1P80370 383 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 CATR1Q13166 79 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 ZNF429Q86V71 674 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 OCC1Q8TAD7 63 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 PIFOQ8TCI5 191 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 MRGPRDQ8TDS7 321 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 WIPF2Q8TF74 440 aaPredicted RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 PINX1Q96BK5 328 aaKnown RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 TVP23CQ96ET8 276 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 DUX3Q96PT4 197 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 ATP6V0BQ99437 205 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 C12orf57Q99622 126 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 UBE2L5PA0A1B0GUS4 154 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 LINC00473A8K010 186 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 IGHV3-7P01780 117 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 SMIM6P0DI80 62 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 AKR1D1P51857 326 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 ELOBQ15370 118 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 ATP6V1FQ16864 119 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 SPANXN5Q5MJ07 72 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 CST9LP1Q5W188 147 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 SLC25A24Q6NUK1 477 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 OR4X2Q8NGF9 303 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 OR13D1Q8NGV5 346 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 IL17DQ8TAD2 202 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 P2RX4Q99571 388 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 HSD17B10Q99714 261 aaKnown RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 TMEM147Q9BVK8 224 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 GNG13Q9P2W3 67 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 TRAV34A0A0B4J273 112 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 MAP1LC3B2A6NCE7 125 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 B4DEV8 164 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 PROP1O75360 226 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 S100A8P05109 93 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 TAGLN2P37802 199 aaKnown RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 RND2P52198 227 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 KRTAP10-11P60412 298 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 ZNF816Q0VGE8 651 aaPredicted RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 HNF4GQ14541 408 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 LDLRAD2Q5SZI1 272 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 RPP25LQ8N5L8 163 aaKnown RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 Q8WTZ3 238 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 TCTEX1D2Q8WW35 142 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 NIPSNAP3BQ9BS92 247 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 MAP1LC3BQ9GZQ8 125 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 JPT1Q9UK76 154 aa3.8□□□□□ -1.8
LINC00550-201ENST00000629293 LSM4Q9Y4Z0 139 aaKnown RBP3.8□□□□□ -1.8
LINC00550-201ENST00000629293 ZNF727A8MUV8 499 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 KRASP01116 189 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 CXCL1P09341 107 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 CTAG1AP78358 180 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 S100A12P80511 92 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 PNRC1Q12796 327 aaPredicted RBP3.79□□□□□ -1.8
LINC00550-201ENST00000629293 HES1Q14469 280 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 OR2B11Q5JQS5 317 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 LCN15Q6UWW0 184 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 CIB3Q96Q77 187 aaPredicted RBP3.79□□□□□ -1.8
LINC00550-201ENST00000629293 NCOR1P1Q9H4R4 102 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 TMEM242Q9NWH2 141 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 VAX2Q9UIW0 290 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 C15orf62A8K5M9 175 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 CGB3P0DN86 165 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 CGB7P0DN87 165 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 DUTP33316 252 aaKnown RBP3.79□□□□□ -1.8
LINC00550-201ENST00000629293 FGF8P55075 233 aaPredicted RBP3.79□□□□□ -1.8
LINC00550-201ENST00000629293 Q3ZCU0 254 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 DTD1Q8TEA8 209 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 SDSLQ96GA7 329 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 TSSC4Q9Y5U2 329 aaPredicted RBP3.79□□□□□ -1.8
LINC00550-201ENST00000629293 IGHV3-43A0A0B4J1X8 118 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 A6NDX4 124 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 ZFP92A6NM28 416 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 ITGB1BP1O14713 200 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 MGST3O14880 152 aa3.79□□□□□ -1.8
LINC00550-201ENST00000629293 RBFOX2O43251 390 aaKnown RBP eCLIP3.79□□□□□ -1.8
LINC00550-201ENST00000629293 SPINT2O43291 252 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms