RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ZC4H2Q9NQZ6 224 aa15.11■□□□□ 0.01
UPF3A-211ENST00000618700 GNG7O60262 68 aa15.1■□□□□ 0.01
UPF3A-211ENST00000618700 SCAF4O95104 1147 aaKnown RBP15.1■□□□□ 0.01
UPF3A-211ENST00000618700 KLF5Q13887 457 aaPredicted RBP15.1■□□□□ 0.01
UPF3A-211ENST00000618700 GAMTQ14353 236 aa15.1■□□□□ 0.01
UPF3A-211ENST00000618700 RPEL1Q2QD12 228 aa15.1■□□□□ 0.01
UPF3A-211ENST00000618700 OR10P1Q8NGE3 313 aa15.1■□□□□ 0.01
UPF3A-211ENST00000618700 ACY3Q96HD9 319 aa15.1■□□□□ 0.01
UPF3A-211ENST00000618700 NUPL2O15504 423 aaKnown RBP15.09■□□□□ 0.01
UPF3A-211ENST00000618700 OR2C1O95371 312 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 IGLC1P0CG04 106 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 SULT1A1P50225 295 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 DLK1P80370 383 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 FGL1Q08830 312 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 Q5BKY6 102 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 WFDC9Q8NEX5 89 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 DCUN1D4Q92564 292 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 NPIPB3Q92617 1050 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 DLX4Q92988 240 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-211ENST00000618700 SLC35E1Q96K37 410 aa15.09■□□□□ 0.01
UPF3A-211ENST00000618700 FNDC10F2Z333 226 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 G3V3Q6 166 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 CST7O76096 145 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 IGKV1-17P01599 117 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 STX12Q86Y82 276 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 GPHB5Q86YW7 130 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 C1QL4Q86Z23 238 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 OR2T35Q8NGX2 323 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 GGACTQ9BVM4 153 aa15.08■□□□□ 0
UPF3A-211ENST00000618700 OR10J1P30954 320 aa15.07■□□□□ 0
UPF3A-211ENST00000618700 SYNJ2BPP57105 145 aa15.07■□□□□ 0
UPF3A-211ENST00000618700 EWSR1Q01844 656 aaKnown RBP eCLIP15.07■□□□□ 0
UPF3A-211ENST00000618700 SLC38A11Q08AI6 406 aa15.07■□□□□ 0
UPF3A-211ENST00000618700 REC114Q7Z4M0 266 aa15.07■□□□□ 0
UPF3A-211ENST00000618700 THAP6Q8TBB0 222 aa15.07■□□□□ 0
UPF3A-211ENST00000618700 SLC25A31Q9H0C2 315 aa15.07■□□□□ 0
UPF3A-211ENST00000618700 hCG_2014768A0A024R1R8 64 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 IGKV1D-37A0A075B6S9 117 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 TRAV30A0A087WSZ9 112 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 A0A1B0GVG6 124 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 OVOL1O14753 267 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 SCGB2A1O75556 95 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 RELQ04864 619 aaPredicted RBP15.06■□□□□ 0
UPF3A-211ENST00000618700 BAXQ07812 192 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 THAP8Q8NA92 274 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 OR1S2Q8NGQ3 325 aa15.06■□□□□ 0
UPF3A-211ENST00000618700 MGAM2Q2M2H8 2515 aa15.05■□□□□ 0
UPF3A-211ENST00000618700 IGKV1OR2-108A0A075B7D4 117 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 IGHV3-35A0A0C4DH35 117 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 LGALS9O00182 355 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 NDUFA4O00483 81 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 CD33P20138 364 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 TIGITQ495A1 244 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 UNQ9165/PRO28630Q6UXU0 137 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 TMEM144Q7Z5S9 345 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 TMEM217Q8N7C4 229 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 TMEM190Q8WZ59 177 aa15.05■□□□□ -0
UPF3A-211ENST00000618700 A8MWP6 167 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 S100A11P31949 105 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 YPEL3P61236 119 aaPredicted RBP15.04■□□□□ -0
UPF3A-211ENST00000618700 HBG1P69891 147 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 HBG2P69892 147 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 NHLH2Q02577 135 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 AKR1C1Q04828 323 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 VWC2Q2TAL6 325 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 FAM106AQ4KMX7 169 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 ZNF600Q6ZNG1 722 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 OR9G4Q8NGQ1 327 aa15.04■□□□□ -0
UPF3A-211ENST00000618700 RPL12P30050 165 aaKnown RBP15.03■□□□□ -0
UPF3A-211ENST00000618700 LILRB2Q8N423 598 aa15.03■□□□□ -0
UPF3A-211ENST00000618700 ST6GAL2Q96JF0 529 aa15.03■□□□□ -0
UPF3A-211ENST00000618700 TRGV9Q99603 122 aa15.03■□□□□ -0
UPF3A-211ENST00000618700 HSPB11Q9Y547 144 aa15.03■□□□□ -0
UPF3A-211ENST00000618700 SMCO3A2RU48 225 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 ZFP92A6NM28 416 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 SMLR1H3BR10 107 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 ATP6V1FQ16864 119 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 IL34Q6ZMJ4 242 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 RCC1LQ96I51 464 aaKnown RBP15.02■□□□□ -0
UPF3A-211ENST00000618700 AQP10Q96PS8 301 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 TMEM147Q9BVK8 224 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 NPVFQ9HCQ7 196 aa15.02■□□□□ -0
UPF3A-211ENST00000618700 PUS1Q9Y606 427 aaKnown RBP eCLIP15.02■□□□□ -0
UPF3A-211ENST00000618700 TMEM213A2RRL7 107 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 TOMM40O96008 361 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 TOMM20LQ6UXN7 152 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 OR5C1Q8NGR4 320 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 UQCC1Q9NVA1 299 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 PEMTQ9UBM1 199 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 TNFSF18Q9UNG2 199 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 LSM4Q9Y4Z0 139 aaKnown RBP15.01□□□□□ -0.01
UPF3A-211ENST00000618700 NOTCH3Q9UM47 2321 aa15.01□□□□□ -0.01
UPF3A-211ENST00000618700 FXYD6-FXYD2A0A087WZ82 144 aa15□□□□□ -0.01
UPF3A-211ENST00000618700 ZNF320A2RRD8 509 aa15□□□□□ -0.01
UPF3A-211ENST00000618700 ELLP55199 621 aaPredicted RBP15□□□□□ -0.01
UPF3A-211ENST00000618700 ZNF90Q03938 601 aa15□□□□□ -0.01
UPF3A-211ENST00000618700 MCRIP2Q9BUT9 160 aaKnown RBP15□□□□□ -0.01
UPF3A-211ENST00000618700 WDR83OSQ9Y284 106 aa15□□□□□ -0.01
UPF3A-211ENST00000618700 UFC1Q9Y3C8 167 aa15□□□□□ -0.01
UPF3A-211ENST00000618700 RNF222A6NCQ9 220 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms