RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 HAGHQ16775 308 aa11.96□□□□□ -0.49
BRCA1-228ENST00000618469 CNPY1Q3B7I2 92 aa11.96□□□□□ -0.49
BRCA1-228ENST00000618469 PRSS54Q6PEW0 395 aa11.96□□□□□ -0.49
BRCA1-228ENST00000618469 RNF2Q99496 336 aa11.96□□□□□ -0.49
BRCA1-228ENST00000618469 U3KQ87 197 aa11.96□□□□□ -0.49
BRCA1-228ENST00000618469 OR4E1P0C645 316 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 TIGITQ495A1 244 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 C4orf46Q504U0 113 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 GGNBP1Q5YKI7 109 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 ETFRF1Q6IPR1 90 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 LYG2Q86SG7 212 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 COQ8AQ8NI60 647 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 ACY3Q96HD9 319 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 CCDC32Q9BV29 185 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 C20orf85Q9H1P6 137 aa11.95□□□□□ -0.5
BRCA1-228ENST00000618469 CSMD3Q7Z407 3707 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 TRAV30A0A087WSZ9 112 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 FAM90A26D6RGX4 464 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 PLA2G10O15496 165 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 ADAP1O75689 374 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 IGKV1-17P01599 117 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 IFNA4P05014 189 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 IGLC1P0CG04 106 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 OR10J1P30954 320 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 BMI1P35226 326 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 OR1S2Q8NGQ3 325 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 ST8SIA2Q92186 375 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 SPATA25Q9BR10 227 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 MAGT1Q9H0U3 335 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 UBQLN2Q9UHD9 624 aa11.94□□□□□ -0.5
BRCA1-228ENST00000618469 IGKV3-7A0A075B6H7 116 aa11.93□□□□□ -0.5
BRCA1-228ENST00000618469 IGHV3-66A0A0C4DH42 116 aa11.93□□□□□ -0.5
BRCA1-228ENST00000618469 RBMY1BA6NDE4 496 aaKnown RBP11.93□□□□□ -0.5
BRCA1-228ENST00000618469 RBMY1EA6NEQ0 496 aaKnown RBP11.93□□□□□ -0.5
BRCA1-228ENST00000618469 OR4C46A6NHA9 309 aa11.93□□□□□ -0.5
BRCA1-228ENST00000618469 A6NHS1 94 aa11.93□□□□□ -0.5
BRCA1-228ENST00000618469 MED6O75586 246 aa11.93□□□□□ -0.5
BRCA1-228ENST00000618469 RBMY1DP0C7P1 496 aaKnown RBP11.93□□□□□ -0.5
BRCA1-228ENST00000618469 PAIP2BQ9ULR5 123 aaKnown RBP11.93□□□□□ -0.5
BRCA1-228ENST00000618469 APOHP02749 345 aaPredicted RBP11.92□□□□□ -0.5
BRCA1-228ENST00000618469 TFPI2P48307 235 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 ODF3L2Q3SX64 289 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 LINC00322Q6ZN03 302 aaPredicted RBP11.92□□□□□ -0.5
BRCA1-228ENST00000618469 LINC00299Q6ZSB3 139 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 TCF24Q7RTU0 167 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 S100ZQ8WXG8 99 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 NPIPB3Q92617 1050 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 METTL26Q96S19 204 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 RETNQ9HD89 108 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 PTTG2Q9NZH5 202 aa11.92□□□□□ -0.5
BRCA1-228ENST00000618469 TRAV6A0A075B6T7 132 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 MPTX1A8MV57 137 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 SYNGR2O43760 224 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 IFNA21P01568 189 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 ATP5IP56385 69 aaPredicted RBP11.91□□□□□ -0.5
BRCA1-228ENST00000618469 SLC35E1Q96K37 410 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 CIB3Q96Q77 187 aaPredicted RBP11.91□□□□□ -0.5
BRCA1-228ENST00000618469 TMEM231Q9H6L2 316 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 VSIRQ9H7M9 311 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 NUDT15Q9NV35 164 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 HYDINQ4G0P3 5121 aa11.91□□□□□ -0.5
BRCA1-228ENST00000618469 WRBO00258 174 aa11.9□□□□□ -0.5
BRCA1-228ENST00000618469 TCRBP04435 133 aa11.9□□□□□ -0.5
BRCA1-228ENST00000618469 NPPCP23582 126 aa11.9□□□□□ -0.5
BRCA1-228ENST00000618469 YPEL3P61236 119 aaPredicted RBP11.9□□□□□ -0.5
BRCA1-228ENST00000618469 RAB11AP62491 216 aa11.9□□□□□ -0.5
BRCA1-228ENST00000618469 GBGT1Q8N5D6 347 aa11.9□□□□□ -0.5
BRCA1-228ENST00000618469 NARS2Q96I59 477 aaKnown RBP11.9□□□□□ -0.5
BRCA1-228ENST00000618469 CITED4Q96RK1 184 aa11.9□□□□□ -0.5
BRCA1-228ENST00000618469 GGTLC1Q9BX51 225 aa11.9□□□□□ -0.5
BRCA1-228ENST00000618469 STARD9Q9P2P6 4700 aa11.89□□□□□ -0.51
BRCA1-228ENST00000618469 H3BP45 60 aa11.89□□□□□ -0.51
BRCA1-228ENST00000618469 DFFBO76075 338 aa11.89□□□□□ -0.51
BRCA1-228ENST00000618469 IL4P05112 153 aa11.89□□□□□ -0.51
BRCA1-228ENST00000618469 FAM90A2PQ658T7 463 aa11.89□□□□□ -0.51
BRCA1-228ENST00000618469 Q8WTZ3 238 aa11.89□□□□□ -0.51
BRCA1-228ENST00000618469 FAM110AQ9BQ89 295 aa11.89□□□□□ -0.51
BRCA1-228ENST00000618469 WDR12Q9GZL7 423 aaKnown RBP11.89□□□□□ -0.51
BRCA1-228ENST00000618469 LOC102724200A0A096LPH7 203 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-228ENST00000618469 A0A1W2PS18 150 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 ZFP92A6NM28 416 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 TOMM40O96008 361 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 CD5P06127 495 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 CRYBB3P26998 211 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 GPX4P36969 197 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-228ENST00000618469 NKX2-1P43699 371 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-228ENST00000618469 P2RY1P47900 373 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 POLR2GP62487 172 aaKnown RBP eCLIP11.88□□□□□ -0.51
BRCA1-228ENST00000618469 RPL11P62913 178 aaKnown RBP11.88□□□□□ -0.51
BRCA1-228ENST00000618469 RPP30P78346 268 aaKnown RBP11.88□□□□□ -0.51
BRCA1-228ENST00000618469 USF2Q15853 346 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-228ENST00000618469 SPANXN5Q5MJ07 72 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 LILRB2Q8N423 598 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 OR4D5Q8NGN0 318 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 MITD1Q8WV92 249 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 TBC1D24Q9ULP9 559 aa11.88□□□□□ -0.51
BRCA1-228ENST00000618469 FAM240BA0A1B0GVZ2 78 aa11.87□□□□□ -0.51
BRCA1-228ENST00000618469 SSSCA1O60232 199 aa11.87□□□□□ -0.51
BRCA1-228ENST00000618469 SCGB1D2O95969 90 aa11.87□□□□□ -0.51
BRCA1-228ENST00000618469 HNRNPCP07910 306 aaKnown RBP eCLIP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms