RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 NDUFA4O00483 81 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 METTL15P1P0C7V9 234 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 GP9P14770 177 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 RAB32Q13637 225 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 DEFB121Q5J5C9 76 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 OR8G2PQ6IF36 304 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 SPSB3Q6PJ21 355 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 TMEM182Q6ZP80 229 aaPredicted RBP10.15□□□□□ -0.78
LINC00540-202ENST00000616974 TMEM116Q8NCL8 245 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 RNASEH2CQ8TDP1 164 aaKnown RBP10.15□□□□□ -0.78
LINC00540-202ENST00000616974 C11orf1Q9H5F2 150 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 PSENENQ9NZ42 101 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 CD7P09564 240 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 GATA2P23769 480 aaPredicted RBP10.15□□□□□ -0.79
LINC00540-202ENST00000616974 NPBWR1P48145 328 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 INSL3P51460 131 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 ACOT7LQ6ZUV0 252 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 Q8N1Y9 231 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 RNF2Q99496 336 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 PEMTQ9UBM1 199 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 LSM4Q9Y4Z0 139 aaKnown RBP10.15□□□□□ -0.79
LINC00540-202ENST00000616974 ALG5Q9Y673 324 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 DNAH7Q8WXX0 4024 aa10.15□□□□□ -0.79
LINC00540-202ENST00000616974 IGKV3-7A0A075B6H7 116 aa10.14□□□□□ -0.79
LINC00540-202ENST00000616974 CORTO00230 105 aa10.14□□□□□ -0.79
LINC00540-202ENST00000616974 CXCL3P19876 107 aa10.14□□□□□ -0.79
LINC00540-202ENST00000616974 OR10J1P30954 320 aa10.14□□□□□ -0.79
LINC00540-202ENST00000616974 RRAS2P62070 204 aaPredicted RBP10.14□□□□□ -0.79
LINC00540-202ENST00000616974 TXN2Q99757 166 aa10.14□□□□□ -0.79
LINC00540-202ENST00000616974 DAZ1Q9NQZ3 744 aaKnown RBP10.14□□□□□ -0.79
LINC00540-202ENST00000616974 C8orf88P0DMB2 117 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 S100A10P60903 97 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 USF2Q15853 346 aaPredicted RBP10.13□□□□□ -0.79
LINC00540-202ENST00000616974 LRRC37A5PQ49AS3 106 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 DYNLRB2Q8TF09 96 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 C2orf50Q96LR7 162 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 SIGLEC8Q9NYZ4 499 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 H0YIZ8 118 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 STPG3Q8N7X2 389 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 ST8SIA2Q92186 375 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 TENM2Q9NT68 2774 aa10.13□□□□□ -0.79
LINC00540-202ENST00000616974 FAM24AA6NFZ4 105 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 MED6O75586 246 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 OR2F1Q13607 317 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 TMEM14EPQ6UXP3 125 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 OR5AC2Q9NZP5 309 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 STRAPQ9Y3F4 350 aaKnown RBP10.12□□□□□ -0.79
LINC00540-202ENST00000616974 SNRPGP15A8MWD9 76 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 PTTG1O95997 202 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 PSG1P11464 419 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 GUCA2BQ16661 112 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 ZNF600Q6ZNG1 722 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 SMIM8Q96KF7 97 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 ATP6V0BQ99437 205 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 RHPN1-AS1Q9BWJ2 59 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 GPR61Q9BZJ8 451 aa10.12□□□□□ -0.79
LINC00540-202ENST00000616974 IGHV7-4-1A0A0J9YVY3 117 aa10.11□□□□□ -0.79
LINC00540-202ENST00000616974 CHEK1O14757 476 aa10.11□□□□□ -0.79
LINC00540-202ENST00000616974 SSNA1O43805 119 aa10.11□□□□□ -0.79
LINC00540-202ENST00000616974 CST7O76096 145 aa10.11□□□□□ -0.79
LINC00540-202ENST00000616974 CIB3Q96Q77 187 aaPredicted RBP10.11□□□□□ -0.79
LINC00540-202ENST00000616974 GPN1Q9HCN4 374 aaPredicted RBP10.11□□□□□ -0.79
LINC00540-202ENST00000616974 SMPXQ9UHP9 88 aa10.11□□□□□ -0.79
LINC00540-202ENST00000616974 UFC1Q9Y3C8 167 aa10.11□□□□□ -0.79
LINC00540-202ENST00000616974 IGSF23A1L1A6 192 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 PRAF2O60831 178 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 IL4P05112 153 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 SLC25A4P12235 298 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 RELQ04864 619 aaPredicted RBP10.1□□□□□ -0.79
LINC00540-202ENST00000616974 ZNF124Q15973 351 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 GBGT1Q8N5D6 347 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 ASCL2Q99929 193 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 MRPL27Q9P0M9 148 aaKnown RBP10.1□□□□□ -0.79
LINC00540-202ENST00000616974 TRAV14DV4A0A0A6YYC5 116 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 PIGBOS1A0A0B4J2F0 54 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 RPS10-NUDT3A0A1W2PQS6 291 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 ZFP92A6NM28 416 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 DFFBO76075 338 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 DCTN2Q13561 401 aaKnown RBP10.1□□□□□ -0.79
LINC00540-202ENST00000616974 TMEM217Q8N7C4 229 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 OR11H7Q8NGC8 314 aa10.1□□□□□ -0.79
LINC00540-202ENST00000616974 SMCO3A2RU48 225 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 TFPI2P48307 235 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 CAV2P51636 162 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 RAB11AP62491 216 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 FAM24BQ8N5W8 94 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 DEFB125Q8N687 156 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 OR51G1Q8NGK1 321 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 C19orf73Q9NVV2 129 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 MGAT4CQ9UBM8 478 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 GPX4P36969 197 aaPredicted RBP10.09□□□□□ -0.79
LINC00540-202ENST00000616974 CD81P60033 236 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 FCN2Q15485 313 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 Q5BKY6 102 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 SLC35E1Q96K37 410 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 CITED4Q96RK1 184 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 RAB40CQ96S21 281 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 PBDC1Q9BVG4 233 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 PALMDQ9NP74 551 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 GAR1Q9NY12 217 aaKnown RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms