RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 Q8NAQ8 132 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 OR6F1Q8NGZ6 308 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 MOB3AQ96BX8 217 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 MISP3Q96FF7 219 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 METTL26Q96S19 204 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 ABHD1Q96SE0 405 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 MS4A6AQ9H2W1 248 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 AUNIPQ9H7T9 357 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 SEPSECSQ9HD40 501 aaKnown RBP4.58□□□□□ -1.68
CUX1-220ENST00000607092 IFT46Q9NQC8 304 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 RABAC1Q9UI14 185 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 MUC4Q99102 2169 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 TRAV30A0A087WSZ9 112 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 DEFB131BA0A096LNP1 70 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 FAM240BA0A1B0GVZ2 78 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 SMIM30A4D0T7 59 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 NAP1L6A6NFF2 107 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 SMIM9A6NGZ8 99 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 GABARAPH6UMI1 98 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 I3L2K1 104 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 LYRM1O43325 122 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 SSX5O60225 188 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 PGLYRP1O75594 196 aaPredicted RBP4.57□□□□□ -1.68
CUX1-220ENST00000607092 MT-CO2P00403 227 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 IFNA10P01566 189 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 RLN1P04808 185 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 HLA-DMAP28067 261 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 GNRHRP30968 328 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 NUP62P37198 522 aaPredicted RBP4.57□□□□□ -1.68
CUX1-220ENST00000607092 LPAR6P43657 344 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 RFX2P48378 723 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 FAM3BP58499 235 aaPredicted RBP4.57□□□□□ -1.68
CUX1-220ENST00000607092 AP3S2P59780 193 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 HSPE1P61604 102 aaKnown RBP4.57□□□□□ -1.68
CUX1-220ENST00000607092 SNRPD3P62318 126 aaKnown RBP4.57□□□□□ -1.68
CUX1-220ENST00000607092 PRCDQ00LT1 54 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 RNF212Q495C1 297 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 TOMM20LQ6UXN7 152 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 Q6ZTC4 211 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 H2BFWTQ7Z2G1 175 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 NRARPQ7Z6K4 114 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 TRPT1Q86TN4 253 aaKnown RBP4.57□□□□□ -1.68
CUX1-220ENST00000607092 SNX29P2Q8IUI4 249 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 UBE2DNLQ8IWF7 75 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 OR5H6Q8NGV6 325 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 LGALS14Q8TCE9 139 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 FCAMRQ8WWV6 532 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 ZNF414Q96IQ9 312 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 MARVELD1Q9BSK0 173 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 PDCD10Q9BUL8 212 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 EHFQ9NZC4 300 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 ELF5Q9UKW6 265 aaPredicted RBP4.57□□□□□ -1.68
CUX1-220ENST00000607092 X6R8D5 127 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 DNAH2Q9P225 4427 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 FAT2Q9NYQ8 4349 aa4.57□□□□□ -1.68
CUX1-220ENST00000607092 SRRM2Q9UQ35 2752 aaKnown RBP4.56□□□□□ -1.68
CUX1-220ENST00000607092 IGHV3OR16-8A0A075B7F1 116 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 IGHV3-21A0A0B4J1V1 117 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 A0A1B0GVY2 172 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 INS-IGF2F8WCM5 200 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 DEFB4AO15263 64 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 HNRNPCP07910 306 aaKnown RBP eCLIP4.56□□□□□ -1.688e-7■■□□□ 14.2
CUX1-220ENST00000607092 SPART-AS1P0CW21 52 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 LEMD1Q68G75 181 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 TOMM5Q8N4H5 51 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 STXBP6Q8NFX7 210 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 OR5H2Q8NGV7 314 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 ENKURQ8TC29 256 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 SMIM4Q8WVI0 70 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 ST8SIA2Q92186 375 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 TMEM230Q96A57 120 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 PINX1Q96BK5 328 aaKnown RBP4.56□□□□□ -1.68
CUX1-220ENST00000607092 GPHA2Q96T91 129 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 NEU1Q99519 415 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 ZNF2Q9BSG1 426 aaPredicted RBP4.56□□□□□ -1.68
CUX1-220ENST00000607092 SCPEP1Q9HB40 452 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 ENY2Q9NPA8 101 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 CACFD1Q9UGQ2 172 aa4.56□□□□□ -1.68
CUX1-220ENST00000607092 PUS1Q9Y606 427 aaKnown RBP eCLIP4.56□□□□□ -1.68
CUX1-220ENST00000607092 IGHV3OR16-13A0A075B7E8 117 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 IGHV3-49A0A0A0MS15 119 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 IGHV3-74A0A0B4J1X5 117 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 RPS10-NUDT3A0A1W2PQS6 291 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 K7EQG2 157 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 B3GALNT1O75752 331 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 RBMY1A1P0DJD3 496 aaKnown RBP4.55□□□□□ -1.68
CUX1-220ENST00000607092 RBMY1CP0DJD4 496 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 CRYBB3P26998 211 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 FAUP35544 74 aaKnown RBP4.55□□□□□ -1.68
CUX1-220ENST00000607092 G6PCP35575 357 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 P2RY1P47900 373 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 TSPAN5P62079 268 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 RBMY1FQ15415 496 aaKnown RBP4.55□□□□□ -1.68
CUX1-220ENST00000607092 ZNF124Q15973 351 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 ACTL10Q5JWF8 245 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 TMEM69Q5SWH9 247 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 SAMD13Q5VXD3 122 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 SPATA31B1PQ5VZV4 182 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 NOXA1Q86UR1 476 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 SLC35G3Q8N808 338 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms