RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 BAALCQ8WXS3 180 aa8.65□□□□□ -1.03
LIG1-220ENST00000601091 TRAV8-6A0A0B4J262 113 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 H3BUT2 72 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 SPINK4O60575 86 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 ABHD12Q8N2K0 398 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 OR13A1Q8NGR1 328 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 C8orf46Q8TAG6 207 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 PSMB11A5LHX3 300 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 IGLC1P0CG04 106 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 RPL7P18124 248 aaKnown RBP8.64□□□□□ -1.03
LIG1-220ENST00000601091 HTR1DP28221 377 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 RAB37Q96AX2 223 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 CGB1A6NKQ9 187 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 CECR9P0C854 216 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 TFF3Q07654 80 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 STUMQ69YW2 141 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 Q6P435 159 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 SPCS1Q9Y6A9 102 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 USF3Q68DE3 2245 aa8.64□□□□□ -1.03
LIG1-220ENST00000601091 RPL23P62829 140 aaKnown RBP8.63□□□□□ -1.03
LIG1-220ENST00000601091 VKORC1L1Q8N0U8 176 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 CALYQ9NYX4 217 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 FREM1Q5H8C1 2179 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 MUC21A0A0G2JKD1 596 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 MUC21A0A140T8X8 626 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 TINCRA0A1B0GVN0 87 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 NDUFB3O43676 98 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 CT45A6P0DMU7 189 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 CT45A5P0DMU8 189 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 CT45A7P0DMV0 189 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 IGLC2P0DOY2 106 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 IGLC3P0DOY3 106 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 HSPE1P61604 102 aaKnown RBP8.63□□□□□ -1.03
LIG1-220ENST00000601091 CT45A1Q5HYN5 189 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 MUC21Q5SSG8 566 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 RPP25LQ8N5L8 163 aaKnown RBP8.63□□□□□ -1.03
LIG1-220ENST00000601091 WDR31Q8NA23 367 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 CT45A3Q8NHU0 189 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 TIMD4Q96H15 378 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 RNF115Q9Y4L5 304 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 TRBV24-1A0A075B6N3 115 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 NPIPB11E5RHQ5 1161 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 PSPNO60542 156 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 ARL14EPLP0DKL9 152 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 TGIF2LYQ8IUE0 185 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 FDCSPQ8NFU4 85 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 OR5AN1Q8NGI8 311 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 DCTN5Q9BTE1 182 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 RPL35AP18077 110 aaKnown RBP8.63□□□□□ -1.03
LIG1-220ENST00000601091 OPRK1P41145 380 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 PRSS8Q16651 343 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 ITLN1Q8WWA0 313 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 EDA2RQ9HAV5 297 aa8.63□□□□□ -1.03
LIG1-220ENST00000601091 LOC107984640A0A0U1RRK4 108 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 VMA21Q3ZAQ7 101 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 CT83Q5H943 113 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 TMEM14EPQ6UXP3 125 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 GCSAMQ8N6F7 178 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 ZNRF1Q8ND25 227 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 TRANK1O15050 2925 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 SS18L1O75177 396 aaPredicted RBP8.62□□□□□ -1.03
LIG1-220ENST00000601091 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.62□□□□□ -1.03
LIG1-220ENST00000601091 VSTM2AQ8TAG5 236 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 SPRR3Q9UBC9 169 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 FAM231BA6NCW3 169 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 TAX1BP3O14907 124 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 ARL16Q0P5N6 197 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 CCL17Q92583 94 aa8.62□□□□□ -1.03
LIG1-220ENST00000601091 UBE2L3P68036 154 aaKnown RBP8.61□□□□□ -1.03
LIG1-220ENST00000601091 ACSF3Q4G176 576 aaPredicted RBP8.61□□□□□ -1.03
LIG1-220ENST00000601091 RPL39P5Q59GN2 51 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 ADAMTSL5Q6ZMM2 481 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 LEAP2Q969E1 77 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 GRAMD2BQ96HH9 432 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 CCDC179H3BU77 68 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 RPL30P62888 115 aaKnown RBP8.61□□□□□ -1.03
LIG1-220ENST00000601091 OR10J3Q5JRS4 329 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 FAM90A2PQ658T7 463 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 CCL13Q99616 98 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 MRPS16Q9Y3D3 137 aaKnown RBP8.61□□□□□ -1.03
LIG1-220ENST00000601091 SNURFLB1AK76 121 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 GNB2P62879 340 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 UTF1Q5T230 341 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 TEX43Q6ZNM6 134 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 TMEM256Q8N2U0 113 aa8.61□□□□□ -1.03
LIG1-220ENST00000601091 RIF1Q5UIP0 2472 aaKnown RBP8.61□□□□□ -1.03
LIG1-220ENST00000601091 C8orf86Q6ZUL3 223 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 FAM19A5Q7Z5A7 132 aaPredicted RBP8.6□□□□□ -1.03
LIG1-220ENST00000601091 RND1Q92730 232 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 ARL2-SNX15V9GYD0 113 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 ZNF503-AS2A6NEH8 195 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 ZNF253O75346 499 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 KRTAP27-1Q3LI81 207 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 CRIP3Q6Q6R5 217 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 CACNA1HO95180 2353 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 WDFY4Q6ZS81 3184 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 ORM1P02763 201 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 TFF1P04155 84 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 GNB1P62873 340 aa8.6□□□□□ -1.03
LIG1-220ENST00000601091 RPL31P62899 125 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms