RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SMCO3A2RU48 225 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 ANKRD34BA5PLL1 514 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 NUPL2O15504 423 aaKnown RBP11.06□□□□□ -0.64
UPF1-211ENST00000600868 SCGB2A1O75556 95 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 DFFBO76075 338 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 TRBV12-3P01733 135 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 IGLC1P0CG04 106 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 CXCL2P19875 107 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 OR10J1P30954 320 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 ARL3P36405 182 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 EIF2B2P49770 351 aaKnown RBP11.06□□□□□ -0.64
UPF1-211ENST00000600868 AP2S1P53680 142 aaPredicted RBP11.06□□□□□ -0.64
UPF1-211ENST00000600868 SHISA2Q6UWI4 295 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 TREML4Q6UXN2 200 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 C8orf86Q6ZUL3 223 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 MDFIQ99750 246 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 SMIM3Q9BZL3 60 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 FBXL17Q9UF56 701 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 LSM4Q9Y4Z0 139 aaKnown RBP11.06□□□□□ -0.64
UPF1-211ENST00000600868 IGKV1D-37A0A075B6S9 117 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 IGKV1OR2-108A0A075B7D4 117 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 PPP5D1E7EU14 171 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 BMPR1BO00238 502 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 TAAR5O14804 337 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 GGCTO75223 188 aaKnown RBP11.05□□□□□ -0.64
UPF1-211ENST00000600868 IGKV1-17P01599 117 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 ADMP35318 185 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 NSUN5P1Q3KNT7 163 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 LGALSLQ3ZCW2 172 aaPredicted RBP11.05□□□□□ -0.64
UPF1-211ENST00000600868 TEPPQ6URK8 271 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 TRGV9Q99603 122 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 CHRDL1Q9BU40 450 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 WFDC1Q9HC57 220 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 WDR83OSQ9Y284 106 aa11.05□□□□□ -0.64
UPF1-211ENST00000600868 IGHV4OR15-8A0A075B7B6 117 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 A0A087WW49 117 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 UBE2L5PA0A1B0GUS4 154 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 ZFP92A6NM28 416 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 ZP3P21754 424 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 YPEL3P61236 119 aaPredicted RBP11.04□□□□□ -0.64
UPF1-211ENST00000600868 ZNF616Q08AN1 781 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 DEFB136Q30KP8 78 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 OR11H1Q8NG94 326 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 OR1N2Q8NGR9 330 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 RAX2Q96IS3 184 aa11.04□□□□□ -0.64
UPF1-211ENST00000600868 PARD6GQ9BYG4 376 aaPredicted RBP11.04□□□□□ -0.64
UPF1-211ENST00000600868 LINC01619G3V211 115 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 CCL24O00175 119 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 MPDU1O75352 247 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 IFNA5P01569 189 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 FABP1P07148 127 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 RELQ04864 619 aaPredicted RBP11.03□□□□□ -0.64
UPF1-211ENST00000600868 RAB31Q13636 194 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 FHL3Q13643 280 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 ZNF266Q14584 549 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 TIGITQ495A1 244 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 BTNL8Q6UX41 500 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 TMUB2Q71RG4 321 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 GPHB5Q86YW7 130 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 DPF1Q92782 380 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 ARPC5LQ9BPX5 153 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 WDR61Q9GZS3 305 aaKnown RBP11.03□□□□□ -0.64
UPF1-211ENST00000600868 ARL6Q9H0F7 186 aa11.03□□□□□ -0.64
UPF1-211ENST00000600868 OR2C1O95371 312 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 TOMM40O96008 361 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 FGF7P21781 194 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 HOXD3P31249 432 aaPredicted RBP11.02□□□□□ -0.65
UPF1-211ENST00000600868 MYCNOSP40205 109 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 LAMTOR1Q6IAA8 161 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 ZNF600Q6ZNG1 722 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 C9orf62Q8N4C0 152 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 OR4F17Q8NGA8 305 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 SCGB1C1Q8TD33 95 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 PPP1R14BQ96C90 147 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 ZNF414Q96IQ9 312 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 OR4F4Q96R69 305 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 MGST2Q99735 147 aa11.02□□□□□ -0.65
UPF1-211ENST00000600868 KANTRA0A1W2PQU2 76 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 NDUFA4O00483 81 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 AGPAT2O15120 278 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 BCL2L11O43521 198 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 RD3LP0DJH9 198 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 CAMLGP49069 296 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 SELENOTP62341 195 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 ZNF90Q03938 601 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 RPEL1Q2QD12 228 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 CYP2G1PQ6ZSU1 146 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 Q8WTZ3 238 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 CYTL1Q9NRR1 136 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 STAB1Q9NY15 2570 aa11.01□□□□□ -0.65
UPF1-211ENST00000600868 BORCS7-ASMTA0A0B4J1R7 106 aa11□□□□□ -0.65
UPF1-211ENST00000600868 JTBO76095 146 aa11□□□□□ -0.65
UPF1-211ENST00000600868 CFDP00746 253 aaPredicted RBP11□□□□□ -0.65
UPF1-211ENST00000600868 PSG1P11464 419 aa11□□□□□ -0.65
UPF1-211ENST00000600868 NKX2-5P52952 324 aaPredicted RBP11□□□□□ -0.65
UPF1-211ENST00000600868 KLF5Q13887 457 aaPredicted RBP11□□□□□ -0.65
UPF1-211ENST00000600868 OPCMLQ14982 345 aa11□□□□□ -0.65
UPF1-211ENST00000600868 FAM106AQ4KMX7 169 aa11□□□□□ -0.65
UPF1-211ENST00000600868 RPL7L1Q6DKI1 246 aaKnown RBP11□□□□□ -0.65
UPF1-211ENST00000600868 DUX3Q96PT4 197 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms