RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SYNGR2O43760 224 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 YIF1AO95070 293 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 IFNA21P01568 189 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 IGKV1-17P01599 117 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 IGLC1P0CG04 106 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 GPX4P36969 197 aaPredicted RBP12.13□□□□□ -0.47
LSM4-206ENST00000600289 ID3Q02535 119 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 GUCA2BQ16661 112 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 LAMTOR1Q6IAA8 161 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 MZT2BQ6NZ67 158 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 RBPMS2Q6ZRY4 209 aaKnown RBP12.13□□□□□ -0.47
LSM4-206ENST00000600289 OR4D5Q8NGN0 318 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 NUDT15Q9NV35 164 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 PUS1Q9Y606 427 aaKnown RBP eCLIP12.13□□□□□ -0.47
LSM4-206ENST00000600289 IGHV3OR16-8A0A075B7F1 116 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 FAM240BA0A1B0GVZ2 78 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 CHEK1O14757 476 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 SCAF4O95104 1147 aaKnown RBP12.12□□□□□ -0.47
LSM4-206ENST00000600289 CD5P06127 495 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 CD7P09564 240 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 BMI1P35226 326 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 RND2P52198 227 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 YPEL3P61236 119 aaPredicted RBP12.12□□□□□ -0.47
LSM4-206ENST00000600289 SLC16A13Q7RTY0 426 aa12.12□□□□□ -0.47
LSM4-206ENST00000600289 STARD9Q9P2P6 4700 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 TRAV6A0A075B6T7 132 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 LCE6AA0A183 80 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 MPTX1A8MV57 137 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 ZNF207O43670 478 aaKnown RBP12.11□□□□□ -0.47
LSM4-206ENST00000600289 OR10J1P30954 320 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 RAB11AP62491 216 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 RPP30P78346 268 aaKnown RBP12.11□□□□□ -0.47
LSM4-206ENST00000600289 LINC00322Q6ZN03 302 aaPredicted RBP12.11□□□□□ -0.47
LSM4-206ENST00000600289 SBSPONQ8IVN8 264 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 OR52B4Q8NGK2 314 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 RHPN1-AS1Q9BWJ2 59 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 VSIRQ9H7M9 311 aa12.11□□□□□ -0.47
LSM4-206ENST00000600289 IFNA4P05014 189 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 H2AFB2P0C5Z0 115 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 IAPPP10997 89 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 TIGITQ495A1 244 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 CASC10Q5T4H9 136 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 FAM90A2PQ658T7 463 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 ZNF431Q8TF32 576 aaPredicted RBP12.1□□□□□ -0.47
LSM4-206ENST00000600289 RNF2Q99496 336 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 FAM110AQ9BQ89 295 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 MAGT1Q9H0U3 335 aa12.1□□□□□ -0.47
LSM4-206ENST00000600289 OR11H12B2RN74 326 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 PRSS46E5RG02 174 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 CRYBB3P26998 211 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 NKX2-1P43699 371 aaPredicted RBP12.09□□□□□ -0.47
LSM4-206ENST00000600289 IFITM3Q01628 133 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 NPIPB3Q92617 1050 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 ASCL2Q99929 193 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 TM2D3Q9BRN9 247 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 TMEM231Q9H6L2 316 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 SELENOKQ9Y6D0 94 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 U3KQK5 164 aa12.09□□□□□ -0.47
LSM4-206ENST00000600289 RYR1P21817 5038 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 OR4C46A6NHA9 309 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 WRBO00258 174 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 TOMM40O96008 361 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 GAMTQ14353 236 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 IAH1Q2TAA2 248 aaPredicted RBP12.08□□□□□ -0.48
LSM4-206ENST00000600289 ZBTB8BQ8NAP8 495 aaPredicted RBP12.08□□□□□ -0.48
LSM4-206ENST00000600289 Q8WTZ3 238 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 ACY3Q96HD9 319 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 SLC35E1Q96K37 410 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 METTL26Q96S19 204 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 TUBA4BQ9H853 241 aa12.08□□□□□ -0.48
LSM4-206ENST00000600289 A0A1W2PS18 150 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 IL5P05113 134 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 NPPCP23582 126 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 POLR2GP62487 172 aaKnown RBP eCLIP12.07□□□□□ -0.48
LSM4-206ENST00000600289 DEFB125Q8N687 156 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 ENKURQ8TC29 256 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 ST8SIA2Q92186 375 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 SMIM8Q96KF7 97 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 SEC22CQ9BRL7 303 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 STRAPQ9Y3F4 350 aaKnown RBP12.07□□□□□ -0.48
LSM4-206ENST00000600289 U3KQE9 123 aa12.07□□□□□ -0.48
LSM4-206ENST00000600289 IGKV1D-37A0A075B6S9 117 aa12.06□□□□□ -0.48
LSM4-206ENST00000600289 TRAV2A0A0B4J234 112 aa12.06□□□□□ -0.48
LSM4-206ENST00000600289 APOHP02749 345 aaPredicted RBP12.06□□□□□ -0.48
LSM4-206ENST00000600289 TAS2R30P59541 319 aa12.06□□□□□ -0.48
LSM4-206ENST00000600289 C12orf45Q8N5I9 185 aaPredicted RBP12.06□□□□□ -0.48
LSM4-206ENST00000600289 RAB40CQ96S21 281 aa12.06□□□□□ -0.48
LSM4-206ENST00000600289 WFDC10AQ9H1F0 79 aa12.06□□□□□ -0.48
LSM4-206ENST00000600289 ZMAT4Q9H898 229 aa12.06□□□□□ -0.48
LSM4-206ENST00000600289 SRD5A3Q9H8P0 318 aa12.06□□□□□ -0.48
LSM4-206ENST00000600289 IGHV3-49A0A0A0MS15 119 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 FABP1P07148 127 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 RD3LP0DJH9 198 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 PAX9P55771 341 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 HAGHQ16775 308 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 ODF3L2Q3SX64 289 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 SPANXN5Q5MJ07 72 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 TCF24Q7RTU0 167 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 THAP8Q8NA92 274 aa12.05□□□□□ -0.48
LSM4-206ENST00000600289 NARS2Q96I59 477 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms