RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 FGF7P21781 194 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 EIF5AP63241 154 aaKnown RBP9.8□□□□□ -0.84
UPF1-208ENST00000600012 SLC35B1P78383 322 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 AKR1C1Q04828 323 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 EXOSC2Q13868 293 aaKnown RBP9.8□□□□□ -0.84
UPF1-208ENST00000600012 ALKAL2Q6UX46 152 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 C8orf86Q6ZUL3 223 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 KLHL30-AS1Q8NEE0 82 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 OR1L6Q8NGR2 347 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 ACY3Q96HD9 319 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 TMEM68Q96MH6 324 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 MS4A10Q96PG2 267 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 GINS3Q9BRX5 216 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 RSG1Q9BU20 258 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 WDR61Q9GZS3 305 aaKnown RBP9.8□□□□□ -0.84
UPF1-208ENST00000600012 SH3BGRL3Q9H299 93 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 ARV1Q9H2C2 271 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 S4R3C0 116 aa9.8□□□□□ -0.84
UPF1-208ENST00000600012 RPS10-NUDT3A0A1W2PQS6 291 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 I3L2K1 104 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 NDUFB8O95169 186 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 ATP6V0CP27449 155 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 GPX4P36969 197 aaPredicted RBP9.79□□□□□ -0.84
UPF1-208ENST00000600012 RND2P52198 227 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 GAMTQ14353 236 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 TEX261Q6UWH6 196 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 BTNL8Q6UX41 500 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 ZNF680Q8NEM1 530 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 SCGB1C1Q8TD33 95 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 TMED6Q8WW62 240 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 WDR83OSQ9Y284 106 aa9.79□□□□□ -0.84
UPF1-208ENST00000600012 DNAH9Q9NYC9 4486 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 MFSD2BA6NFX1 497 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 FNDC10F2Z333 226 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 CYB5BO43169 146 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 NHLRC4P0CG21 123 aaPredicted RBP9.78□□□□□ -0.84
UPF1-208ENST00000600012 PPIFP30405 207 aaKnown RBP9.78□□□□□ -0.84
UPF1-208ENST00000600012 CFHR3Q02985 330 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 FAM74A1Q5RGS3 127 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 ETFRF1Q6IPR1 90 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 ACSM6Q6P461 480 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 C18orf65Q6ZTR6 163 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 CACNG8Q8WXS5 425 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 NPIPB3Q92617 1050 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 MGST2Q99735 147 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 PARD6GQ9BYG4 376 aaPredicted RBP9.78□□□□□ -0.84
UPF1-208ENST00000600012 SLC25A32Q9H2D1 315 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 NPVFQ9HCQ7 196 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 FBXL7Q9UJT9 491 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 ZNF580Q9UK33 172 aa9.78□□□□□ -0.84
UPF1-208ENST00000600012 TRBV9A0A0B4J1U6 114 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 IGHV3-23P01764 117 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 SPP1P10451 314 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 HIST1H1BP16401 226 aaKnown RBP9.77□□□□□ -0.85
UPF1-208ENST00000600012 RHOGP84095 191 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 TMEM144Q7Z5S9 345 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 SCARB1Q8WTV0 552 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 NPCDR1Q9BY65 106 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 PLA2G2EQ9NZK7 142 aa9.77□□□□□ -0.85
UPF1-208ENST00000600012 LSM4Q9Y4Z0 139 aaKnown RBP9.77□□□□□ -0.85
UPF1-208ENST00000600012 RYR3Q15413 4870 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 IGKV1OR2-108A0A075B7D4 117 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 CCL24O00175 119 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 IFNA7P01567 189 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 TRGV3P03979 118 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 OR10J1P30954 320 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 CAMLGP49069 296 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 TPPP2P59282 170 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 KLK9Q2XQG4 91 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 TEX38Q6PEX7 206 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 TEPPQ6URK8 271 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 TMEM182Q6ZP80 229 aaPredicted RBP9.76□□□□□ -0.85
UPF1-208ENST00000600012 LCNL1Q6ZST4 164 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 THAP8Q8NA92 274 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 GNPNAT1Q96EK6 184 aaPredicted RBP9.76□□□□□ -0.85
UPF1-208ENST00000600012 PHYHIPLQ96FC7 376 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 RAX2Q96IS3 184 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 GGTLC1Q9BX51 225 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 THYN1Q9P016 225 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 UBQLN2Q9UHD9 624 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 KLK9Q9UKQ9 250 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 U3KQK5 164 aa9.76□□□□□ -0.85
UPF1-208ENST00000600012 IGKV1D-37A0A075B6S9 117 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 H3BUA1 57 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 RGS13O14921 159 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 AGPAT2O15120 278 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 SEC11BP0C7V7 166 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 ELLP55199 621 aaPredicted RBP9.75□□□□□ -0.85
UPF1-208ENST00000600012 C15orf32Q32M92 178 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 ZNF767PQ75MW2 155 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 NECAP1Q8NC96 275 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 OR2G3Q8NGZ4 309 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 PCNPQ8WW12 178 aaKnown RBP9.75□□□□□ -0.85
UPF1-208ENST00000600012 DUX3Q96PT4 197 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 PSMG3Q9BT73 122 aaPredicted RBP9.75□□□□□ -0.85
UPF1-208ENST00000600012 KLK15Q9H2R5 256 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 C21orf62Q9NYP8 219 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 TIMM9Q9Y5J7 89 aa9.75□□□□□ -0.85
UPF1-208ENST00000600012 ZFP92A6NM28 416 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 C17orf112F2Z3M2 114 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms