RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 YIF1AO95070 293 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 YPEL3P61236 119 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-213ENST00000598355 ID3Q02535 119 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 ASAH1Q13510 395 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 C4orf46Q504U0 113 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 RBPMS2Q6ZRY4 209 aaKnown RBP12.05□□□□□ -0.48
TRIM28-213ENST00000598355 OR4D5Q8NGN0 318 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 CIB3Q96Q77 187 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-213ENST00000598355 RNF2Q99496 336 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 WDR12Q9GZL7 423 aaKnown RBP12.05□□□□□ -0.48
TRIM28-213ENST00000598355 OR11H12B2RN74 326 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 CRYBB3P26998 211 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 OR10J1P30954 320 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 TIGITQ495A1 244 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 LAMTOR1Q6IAA8 161 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 DEFB125Q8N687 156 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 OR52B4Q8NGK2 314 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 NUDT15Q9NV35 164 aa12.04□□□□□ -0.48
TRIM28-213ENST00000598355 RBMY1BA6NDE4 496 aaKnown RBP12.03□□□□□ -0.48
TRIM28-213ENST00000598355 RBMY1EA6NEQ0 496 aaKnown RBP12.03□□□□□ -0.48
TRIM28-213ENST00000598355 UPK1BO75841 260 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 RBMY1DP0C7P1 496 aaKnown RBP12.03□□□□□ -0.48
TRIM28-213ENST00000598355 IAPPP10997 89 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 GPX4P36969 197 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-213ENST00000598355 HAGHQ16775 308 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 ODF3L2Q3SX64 289 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 ST8SIA2Q92186 375 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 NPIPB3Q92617 1050 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 WWC2-AS2Q96NR7 200 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 RCHY1Q96PM5 261 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 SRD5A3Q9H8P0 318 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 U3KQE9 123 aa12.03□□□□□ -0.48
TRIM28-213ENST00000598355 IGKV1D-37A0A075B6S9 117 aa12.02□□□□□ -0.49
TRIM28-213ENST00000598355 APOHP02749 345 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-213ENST00000598355 CD5P06127 495 aa12.02□□□□□ -0.49
TRIM28-213ENST00000598355 BMI1P35226 326 aa12.02□□□□□ -0.49
TRIM28-213ENST00000598355 ZNF846Q147U1 533 aa12.02□□□□□ -0.49
TRIM28-213ENST00000598355 CITED4Q96RK1 184 aa12.02□□□□□ -0.49
TRIM28-213ENST00000598355 TUBA4BQ9H853 241 aa12.02□□□□□ -0.49
TRIM28-213ENST00000598355 DNAH7Q8WXX0 4024 aa12.02□□□□□ -0.49
TRIM28-213ENST00000598355 NBEAL2Q6ZNJ1 2754 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 TRAV6A0A075B6T7 132 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 IGHV3-49A0A0A0MS15 119 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 OR4C46A6NHA9 309 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 TOMM40O96008 361 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 IFNA21P01568 189 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 IFNA4P05014 189 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 IFITM3Q01628 133 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 GAMTQ14353 236 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 LILRB2Q8N423 598 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 ACY3Q96HD9 319 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 MAGT1Q9H0U3 335 aa12.01□□□□□ -0.49
TRIM28-213ENST00000598355 TRAV2A0A0B4J234 112 aa12□□□□□ -0.49
TRIM28-213ENST00000598355 WRBO00258 174 aa12□□□□□ -0.49
TRIM28-213ENST00000598355 NKX2-1P43699 371 aaPredicted RBP12□□□□□ -0.49
TRIM28-213ENST00000598355 RAB11AP62491 216 aa12□□□□□ -0.49
TRIM28-213ENST00000598355 USF2Q15853 346 aaPredicted RBP12□□□□□ -0.49
TRIM28-213ENST00000598355 ZNF431Q8TF32 576 aaPredicted RBP12□□□□□ -0.49
TRIM28-213ENST00000598355 METTL26Q96S19 204 aa12□□□□□ -0.49
TRIM28-213ENST00000598355 SPATA25Q9BR10 227 aa12□□□□□ -0.49
TRIM28-213ENST00000598355 ZMAT4Q9H898 229 aa12□□□□□ -0.49
TRIM28-213ENST00000598355 IGKV1OR2-108A0A075B7D4 117 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 IGHV3OR16-13A0A075B7E8 117 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 IGHV3-74A0A0B4J1X5 117 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 FAM240BA0A1B0GVZ2 78 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 H2AFB2P0C5Z0 115 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 NPPCP23582 126 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 POLR2GP62487 172 aaKnown RBP eCLIP11.99□□□□□ -0.49
TRIM28-213ENST00000598355 RPP30P78346 268 aaKnown RBP11.99□□□□□ -0.49
TRIM28-213ENST00000598355 IAH1Q2TAA2 248 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-213ENST00000598355 MZT2BQ6NZ67 158 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 TCF24Q7RTU0 167 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 THAP8Q8NA92 274 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 ZBTB8BQ8NAP8 495 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-213ENST00000598355 Q8WTZ3 238 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 SLC35E1Q96K37 410 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 SEC22CQ9BRL7 303 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 TMEM231Q9H6L2 316 aa11.99□□□□□ -0.49
TRIM28-213ENST00000598355 RCL1Q9Y2P8 373 aaKnown RBP11.99□□□□□ -0.49
TRIM28-213ENST00000598355 A0A1W2PS18 150 aa11.98□□□□□ -0.49
TRIM28-213ENST00000598355 PMS2P5A8MQ11 134 aa11.98□□□□□ -0.49
TRIM28-213ENST00000598355 PAX9P55771 341 aa11.98□□□□□ -0.49
TRIM28-213ENST00000598355 GLMPQ8WWB7 406 aa11.98□□□□□ -0.49
TRIM28-213ENST00000598355 SMIM8Q96KF7 97 aa11.98□□□□□ -0.49
TRIM28-213ENST00000598355 TRGV9Q99603 122 aa11.98□□□□□ -0.49
TRIM28-213ENST00000598355 H3BP45 60 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 DFFBO76075 338 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 IL4P05112 153 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 IL5P05113 134 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 HNRNPCP07910 306 aaKnown RBP eCLIP11.97□□□□□ -0.49
TRIM28-213ENST00000598355 RD3LP0DJH9 198 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 PSG1P11464 419 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 P2RY1P47900 373 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 TAS2R30P59541 319 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 SPANXN5Q5MJ07 72 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 TMEM14EPQ6UXP3 125 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 GGTLC1Q9BX51 225 aa11.97□□□□□ -0.49
TRIM28-213ENST00000598355 STRAPQ9Y3F4 350 aaKnown RBP11.97□□□□□ -0.49
TRIM28-213ENST00000598355 IGHV3-66A0A0C4DH42 116 aa11.96□□□□□ -0.49
TRIM28-213ENST00000598355 SSSCA1O60232 199 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms