RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SLC16A13Q7RTY0 426 aa10.4□□□□□ -0.74
UPF1-205ENST00000598209 SBSPONQ8IVN8 264 aa10.4□□□□□ -0.74
UPF1-205ENST00000598209 OR1S2Q8NGQ3 325 aa10.4□□□□□ -0.74
UPF1-205ENST00000598209 NPIPB3Q92617 1050 aa10.4□□□□□ -0.74
UPF1-205ENST00000598209 ACY3Q96HD9 319 aa10.4□□□□□ -0.74
UPF1-205ENST00000598209 CIB3Q96Q77 187 aaPredicted RBP10.4□□□□□ -0.74
UPF1-205ENST00000598209 RHPN1-AS1Q9BWJ2 59 aa10.4□□□□□ -0.74
UPF1-205ENST00000598209 C19orf73Q9NVV2 129 aa10.4□□□□□ -0.74
UPF1-205ENST00000598209 COL7A1Q02388 2944 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 CHEK1O14757 476 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 IGLC1P0CG04 106 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 OR10J1P30954 320 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 NKX2-1P43699 371 aaPredicted RBP10.39□□□□□ -0.75
UPF1-205ENST00000598209 RAB11AP62491 216 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 IFITM3Q01628 133 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 OR4D5Q8NGN0 318 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 SPAG8Q99932 426 aaPredicted RBP10.39□□□□□ -0.75
UPF1-205ENST00000598209 SEC22CQ9BRL7 303 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 TUBA4BQ9H853 241 aa10.39□□□□□ -0.75
UPF1-205ENST00000598209 PAIP2BQ9ULR5 123 aaKnown RBP10.39□□□□□ -0.75
UPF1-205ENST00000598209 IGHV3OR16-13A0A075B7E8 117 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 IGHV3-74A0A0B4J1X5 117 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 TSPAN4O14817 238 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 GPX4P36969 197 aaPredicted RBP10.38□□□□□ -0.75
UPF1-205ENST00000598209 POLR2GP62487 172 aaKnown RBP eCLIP10.38□□□□□ -0.75
UPF1-205ENST00000598209 RPP30P78346 268 aaKnown RBP10.38□□□□□ -0.75
UPF1-205ENST00000598209 ID3Q02535 119 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 IAH1Q2TAA2 248 aaPredicted RBP10.38□□□□□ -0.75
UPF1-205ENST00000598209 DEFB125Q8N687 156 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 ENKURQ8TC29 256 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 ZNF431Q8TF32 576 aaPredicted RBP10.38□□□□□ -0.75
UPF1-205ENST00000598209 RNF2Q99496 336 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 WFDC10AQ9H1F0 79 aa10.38□□□□□ -0.75
UPF1-205ENST00000598209 OR11H12B2RN74 326 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 APOHP02749 345 aaPredicted RBP10.37□□□□□ -0.75
UPF1-205ENST00000598209 NPPCP23582 126 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 BMI1P35226 326 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 YPEL3P61236 119 aaPredicted RBP10.37□□□□□ -0.75
UPF1-205ENST00000598209 SPANXN5Q5MJ07 72 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 ZBTB8BQ8NAP8 495 aaPredicted RBP10.37□□□□□ -0.75
UPF1-205ENST00000598209 Q8WTZ3 238 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 ST8SIA2Q92186 375 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 SLC35E1Q96K37 410 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 VSIRQ9H7M9 311 aa10.37□□□□□ -0.75
UPF1-205ENST00000598209 IGHV3-66A0A0C4DH42 116 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 H3BP45 60 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 CCSO14618 274 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 SSSCA1O60232 199 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 SCGB1D2O95969 90 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 GAMTQ14353 236 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 C12orf45Q8N5I9 185 aaPredicted RBP10.36□□□□□ -0.75
UPF1-205ENST00000598209 METTL26Q96S19 204 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 SRD5A3Q9H8P0 318 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 GSKIPQ9P0R6 139 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 STRAPQ9Y3F4 350 aaKnown RBP10.36□□□□□ -0.75
UPF1-205ENST00000598209 U3KQK5 164 aa10.36□□□□□ -0.75
UPF1-205ENST00000598209 TOMM40O96008 361 aa10.35□□□□□ -0.75
UPF1-205ENST00000598209 CRYBB3P26998 211 aa10.35□□□□□ -0.75
UPF1-205ENST00000598209 FAM90A2PQ658T7 463 aa10.35□□□□□ -0.75
UPF1-205ENST00000598209 TCF24Q7RTU0 167 aa10.35□□□□□ -0.75
UPF1-205ENST00000598209 LILRB2Q8N423 598 aa10.35□□□□□ -0.75
UPF1-205ENST00000598209 TMEM231Q9H6L2 316 aa10.35□□□□□ -0.75
UPF1-205ENST00000598209 PSENENQ9NZ42 101 aa10.35□□□□□ -0.75
UPF1-205ENST00000598209 IGKV3-7A0A075B6H7 116 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 IGKV1D-37A0A075B6S9 117 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 A0A1W2PS18 150 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 OR4C46A6NHA9 309 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 ZFP92A6NM28 416 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 FAM25EA8MYX2 175 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 PRSS46E5RG02 174 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 IL4P05112 153 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 IL5P05113 134 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 CD5P06127 495 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 RD3LP0DJH9 198 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 HAGHQ16775 308 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 LINC00322Q6ZN03 302 aaPredicted RBP10.34□□□□□ -0.75
UPF1-205ENST00000598209 NRARPQ7Z6K4 114 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 NARS2Q96I59 477 aaKnown RBP10.34□□□□□ -0.75
UPF1-205ENST00000598209 SMIM8Q96KF7 97 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 TM2D3Q9BRN9 247 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 ZMAT4Q9H898 229 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 UBQLN2Q9UHD9 624 aa10.34□□□□□ -0.75
UPF1-205ENST00000598209 HUWE1Q7Z6Z7 4374 aaKnown RBP10.33□□□□□ -0.76
UPF1-205ENST00000598209 RBMY1BA6NDE4 496 aaKnown RBP10.33□□□□□ -0.76
UPF1-205ENST00000598209 C5orf51A6NDU8 294 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 RBMY1EA6NEQ0 496 aaKnown RBP10.33□□□□□ -0.76
UPF1-205ENST00000598209 DFFBO76075 338 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 MBPP02686 304 aaPredicted RBP10.33□□□□□ -0.76
UPF1-205ENST00000598209 HNRNPCP07910 306 aaKnown RBP eCLIP10.33□□□□□ -0.76
UPF1-205ENST00000598209 RBMY1DP0C7P1 496 aaKnown RBP10.33□□□□□ -0.76
UPF1-205ENST00000598209 PSG1P11464 419 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 TFPI2P48307 235 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 PAX9P55771 341 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 DEFA1P59665 94 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 DEFA3P59666 94 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 USF2Q15853 346 aaPredicted RBP10.33□□□□□ -0.76
UPF1-205ENST00000598209 RAB40CQ96S21 281 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 RCL1Q9Y2P8 373 aaKnown RBP10.33□□□□□ -0.76
UPF1-205ENST00000598209 U3KQE9 123 aa10.33□□□□□ -0.76
UPF1-205ENST00000598209 P2RY1P47900 373 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms