RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 FXYD3Q14802 87 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 FAM120AOSQ5T036 256 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 ETFRF1Q6IPR1 90 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 FAM24BQ8N5W8 94 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 DOK5Q9P104 306 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 TBL2Q9Y4P3 447 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 IGHV4-30-2A0A087WSY4 118 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 RPL35P42766 123 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 AKR1D1P51857 326 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 PNRC1Q12796 327 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 PIP4P2Q8N4L2 257 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 NANPQ8TBE9 248 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 YPEL4Q96NS1 127 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 WNT10AQ9GZT5 417 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 SETXQ7Z333 2677 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 NOTCH2Q04721 2471 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 NCBP2LA6PVI3 153 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 LINC00587B1AMM8 73 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 PATE2Q6UY27 113 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 TMEM116Q8NCL8 245 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 MALSU1Q96EH3 234 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 SRSF8Q9BRL6 282 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 C19orf24Q9BVV8 132 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 NAT8Q9UHE5 227 aa13.51□□□□□ -0.25
SHKBP1-216ENST00000598201 TRAV5A0A0B4J249 113 aa13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 TMEM241Q24JQ0 296 aa13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 CLEC2AQ6UVW9 174 aa13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 LRRC75A-AS1Q8N1F1 130 aa13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 GSX1Q9H4S2 264 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 DNAJC4Q9NNZ3 241 aa13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 TNFRSF19Q9NS68 423 aa13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 TECRQ9NZ01 308 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-216ENST00000598201 CENPVL3A0A0U1RRI6 287 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 I3L2K1 104 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 CORTO00230 105 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 PDE6DO43924 150 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 TMEM11P17152 192 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 CX3CL1P78423 397 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 NDPQ00604 133 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 PAX8Q06710 450 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 DERL1Q9BUN8 251 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 BIN3Q9NQY0 253 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 B4DEV8 164 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 NDUFS8O00217 210 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 CLN5O75503 358 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 NDUFB4O95168 129 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 MT-ND4LP03901 98 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 ADIRFQ15847 76 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 ZNF343Q6P1L6 599 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 OR4X1Q8NH49 305 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 FAM167A-AS1Q96KT0 104 aa13.49□□□□□ -0.25
SHKBP1-216ENST00000598201 TRAV20A0A0B4J274 112 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 NPFFO15130 113 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 SELENOTP62341 195 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 RPL23P62829 140 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 ASPHD1Q5U4P2 390 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 UHRF2Q96PU4 802 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 TRGV9Q99603 122 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 SLC25A2Q9BXI2 301 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 SCO2A0A1W2PP80 73 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 COX7A2P2O60397 106 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 OR7C2O60412 319 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 OR10J4P0C629 311 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 C8orf88P0DMB2 117 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 RNF212Q495C1 297 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 KLF17Q5JT82 389 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 ZNF562Q6V9R5 426 aa13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 MRPL32Q9BYC8 188 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-216ENST00000598201 IGHV3OR16-10A0A075B7F0 116 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 F6UZH7 168 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 FABP1P07148 127 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 C10orf113Q5VZT2 155 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 PQLC2Q6ZP29 291 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 C22orf15Q8WYQ4 148 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 SSX3Q99909 188 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 MLXQ9UH92 298 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 URGCP-MRPS24S4R325 110 aa13.47□□□□□ -0.25
SHKBP1-216ENST00000598201 K7EIM0 57 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 FAM106CPP0CH98 169 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 SMIM6P0DI80 62 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 FOLR2P14207 255 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 RAB5AP20339 215 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 TAS2R45P59539 299 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 Q8N9W7 124 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 ARPC1AQ92747 370 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 FOXC2Q99958 501 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 TXNDC17Q9BRA2 123 aa13.46□□□□□ -0.25
SHKBP1-216ENST00000598201 ELOBQ15370 118 aa13.46□□□□□ -0.26
SHKBP1-216ENST00000598201 OR1L4Q8NGR5 311 aa13.46□□□□□ -0.26
SHKBP1-216ENST00000598201 Q8WTZ3 238 aa13.46□□□□□ -0.26
SHKBP1-216ENST00000598201 PFDN5Q99471 154 aa13.46□□□□□ -0.26
SHKBP1-216ENST00000598201 TMEM167BQ9NRX6 74 aa13.46□□□□□ -0.26
SHKBP1-216ENST00000598201 ZNF355PQ9NSJ1 428 aa13.46□□□□□ -0.26
SHKBP1-216ENST00000598201 IGLC1P0CG04 106 aa13.45□□□□□ -0.26
SHKBP1-216ENST00000598201 ZFP82Q8N141 532 aa13.45□□□□□ -0.26
SHKBP1-216ENST00000598201 OR5AU1Q8NGC0 362 aa13.45□□□□□ -0.26
SHKBP1-216ENST00000598201 RNF2Q99496 336 aa13.45□□□□□ -0.26
SHKBP1-216ENST00000598201 MAP1AP78559 2803 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-216ENST00000598201 CYSRT1A8MQ03 144 aa13.44□□□□□ -0.26
SHKBP1-216ENST00000598201 EGR2P11161 476 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms