RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CCDC190Q86UF4 302 aa9.14□□□□□ -0.95
TRIM28-212ENST00000597995 DUSP18Q8NEJ0 188 aa9.14□□□□□ -0.95
TRIM28-212ENST00000597995 MCUBQ9NWR8 336 aa9.14□□□□□ -0.95
TRIM28-212ENST00000597995 SCP2D1Q9UJQ7 156 aa9.14□□□□□ -0.95
TRIM28-212ENST00000597995 IGKV3-7A0A075B6H7 116 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 TRAV2A0A0B4J234 112 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 C11orf94C9JXX5 98 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 NXPH3O95157 252 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 CA1P00915 261 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-212ENST00000597995 SUB1P53999 127 aaKnown RBP eCLIP9.13□□□□□ -0.952e-13■□□□□ 9.9
TRIM28-212ENST00000597995 NMSQ5H8A3 153 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 ZNF600Q6ZNG1 722 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 TCF24Q7RTU0 167 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 LYZL2Q7Z4W2 148 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 OR4X1Q8NH49 305 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 ST8SIA2Q92186 375 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 IL22RA2Q969J5 263 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 GINS3Q9BRX5 216 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 HRH4Q9H3N8 390 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 VSIRQ9H7M9 311 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 APLNQ9ULZ1 77 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 PUS1Q9Y606 427 aaKnown RBP eCLIP9.13□□□□□ -0.95
TRIM28-212ENST00000597995 HECTD4Q9Y4D8 3996 aa9.13□□□□□ -0.95
TRIM28-212ENST00000597995 CORTO00230 105 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 CLN5O75503 358 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 IGKV1-17P01599 117 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 AKR1C4P17516 323 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 OPRK1P41145 380 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 C2orf83Q53S99 150 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 PYDC2Q56P42 97 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 GBGT1Q8N5D6 347 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 ENY2Q9NPA8 101 aa9.12□□□□□ -0.95
TRIM28-212ENST00000597995 DNAH6Q9C0G6 4158 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 A0A0B4J2A0 478 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 IGHV3-66A0A0C4DH42 116 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 DNASE2O00115 360 aaPredicted RBP9.11□□□□□ -0.95
TRIM28-212ENST00000597995 HTR2BP41595 481 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 TIGITQ495A1 244 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 TMEM41BQ5BJD5 291 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 PRSS54Q6PEW0 395 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 SCGB3A2Q96PL1 93 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 MS4A6AQ9H2W1 248 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 HEYLQ9NQ87 328 aaPredicted RBP9.11□□□□□ -0.95
TRIM28-212ENST00000597995 SHPKQ9UHJ6 478 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 KCNIP3Q9Y2W7 256 aa9.11□□□□□ -0.95
TRIM28-212ENST00000597995 CEBPZOSA8MTT3 80 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 IGLL5B9A064 214 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 DEFB4AO15263 64 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 IGLC1P0CG04 106 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 SULT1A3P0DMM9 295 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 SULT1A4P0DMN0 295 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 DEFB131AP59861 70 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 LINC00336Q6ZUF6 198 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 TOMM5Q8N4H5 51 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 Q8NAQ8 132 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 SLC24A4Q8NFF2 622 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 HSPB7Q9UBY9 170 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 CACFD1Q9UGQ2 172 aa9.1□□□□□ -0.95
TRIM28-212ENST00000597995 ZNF701M0R085 212 aaPredicted RBP9.09□□□□□ -0.95
TRIM28-212ENST00000597995 MIFP14174 115 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 NPY1RP25929 384 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 CRYBB3P26998 211 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 CCR6P51684 374 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 SMCO1Q147U7 214 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 LEMD1Q68G75 181 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 TMED4Q7Z7H5 227 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 STHQ8IWL8 128 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 FAM24BQ8N5W8 94 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 RNASEH2CQ8TDP1 164 aaKnown RBP9.09□□□□□ -0.95
TRIM28-212ENST00000597995 SRRQ9GZT4 340 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 RBKSQ9H477 322 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 TMEM231Q9H6L2 316 aa9.09□□□□□ -0.95
TRIM28-212ENST00000597995 PITX3O75364 302 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 GIG44P09565 113 aaPredicted RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 RBMY1A1P0DJD3 496 aaKnown RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 RBMY1CP0DJD4 496 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 SPP1P10451 314 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 S100A5P33763 92 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 FAUP35544 74 aaKnown RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 RND2P52198 227 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 AP3S2P59780 193 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 RPL11P62913 178 aaKnown RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 RBMY1FQ15415 496 aaKnown RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 BAK1Q16611 211 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 MORN3Q6PF18 240 aaPredicted RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 TRPT1Q86TN4 253 aaKnown RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 LGI3Q8N145 548 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 SDHCQ99643 169 aaPredicted RBP9.08□□□□□ -0.96
TRIM28-212ENST00000597995 U3KQE9 123 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 KIAA1109Q2LD37 5005 aa9.08□□□□□ -0.96
TRIM28-212ENST00000597995 TRAV30A0A087WSZ9 112 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 TRAV10A0A0B4J240 114 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 IGHV4-28A0A0C4DH34 117 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 RPS10-NUDT3A0A1W2PQS6 291 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 A0A1W2PS18 150 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 ZNF705EA8MWA4 302 aaPredicted RBP9.07□□□□□ -0.96
TRIM28-212ENST00000597995 SLC25A4P12235 298 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 NPPCP23582 126 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 HLA-DMBP28068 263 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 PPP1R1AQ13522 171 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms