RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 HOXA1P49639 335 aaPredicted RBP7.97□□□□□ -1.13
VPS4B-202ENST00000588059 AP3S2P59780 193 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 DEFB131AP59861 70 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 DHODHQ02127 395 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 TMEM268Q5VZI3 342 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 Q6ZR54 194 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 TOMM5Q8N4H5 51 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 OR1P1Q8NH06 330 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 PINX1Q96BK5 328 aaKnown RBP7.97□□□□□ -1.13
VPS4B-202ENST00000588059 OR10C1Q96KK4 312 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 SCGB3A2Q96PL1 93 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 SCRT1Q9BWW7 348 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 TMEM222Q9H0R3 208 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 ENY2Q9NPA8 101 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 CELA1Q9UNI1 258 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 V9GYH0 126 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 X6R8D5 127 aa7.97□□□□□ -1.13
VPS4B-202ENST00000588059 LRP1BQ9NZR2 4599 aa7.96□□□□□ -1.13
VPS4B-202ENST00000588059 HERC1Q15751 4861 aa7.96□□□□□ -1.13
VPS4B-202ENST00000588059 DEFB131BA0A096LNP1 70 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 A0A0G2JRQ6 117 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 ZNF701M0R085 212 aaPredicted RBP7.96□□□□□ -1.14
VPS4B-202ENST00000588059 NUPL2O15504 423 aaKnown RBP7.96□□□□□ -1.14
VPS4B-202ENST00000588059 DFFBO76075 338 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 CDS2O95674 445 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 MT-CO2P00403 227 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 IGHV3-48P01763 117 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 P0C879 139 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 AKR1C4P17516 323 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 C4BPBP20851 252 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 ETV6P41212 452 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 RELQ04864 619 aaPredicted RBP7.96□□□□□ -1.14
VPS4B-202ENST00000588059 SPANXN2Q5MJ10 180 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 ZNF767PQ75MW2 155 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 TCF24Q7RTU0 167 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 CCDC190Q86UF4 302 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 SELENOHQ8IZQ5 122 aaKnown RBP7.96□□□□□ -1.14
VPS4B-202ENST00000588059 FAM24BQ8N5W8 94 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 LHFPL5Q8TAF8 219 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 GLYATL2Q8WU03 294 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 RBPMSQ93062 196 aaKnown RBP7.96□□□□□ -1.14
VPS4B-202ENST00000588059 KCNIP3Q9Y2W7 256 aa7.96□□□□□ -1.14
VPS4B-202ENST00000588059 IGLV2-18A0A075B6J9 118 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 YIF1AO95070 293 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 INPP1P49441 399 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 MFAP4P55083 255 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 PAFAH1B2P68402 229 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 KLF9Q13886 244 aaPredicted RBP7.95□□□□□ -1.14
VPS4B-202ENST00000588059 ZNF79Q15937 498 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 C12orf74Q32Q52 190 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 TMEM41BQ5BJD5 291 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 Q6ZRM9 215 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 TMED4Q7Z7H5 227 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 TRPT1Q86TN4 253 aaKnown RBP7.95□□□□□ -1.14
VPS4B-202ENST00000588059 FAM219AQ8IW50 185 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 STHQ8IWL8 128 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 CENPSQ8N2Z9 138 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 ZNF114Q8NC26 417 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 TRIM63Q969Q1 353 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 TMEM230Q96A57 120 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 NDUFAF3Q9BU61 184 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 MS4A6AQ9H2W1 248 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.95□□□□□ -1.14
VPS4B-202ENST00000588059 PRR13Q9NZ81 148 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 CACNG5Q9UF02 275 aa7.95□□□□□ -1.14
VPS4B-202ENST00000588059 NACAE9PAV3 2078 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 TRAV14DV4A0A0A6YYC5 116 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 I3L2K1 104 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 GNG7O60262 68 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 CDK2AP2O75956 126 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 NXPH3O95157 252 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 SUB1P53999 127 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS4B-202ENST00000588059 LILRB2Q8N423 598 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 MAPKAPK5-AS1Q8N8E1 139 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 ST8SIA2Q92186 375 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 GPR146Q96CH1 333 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 VSIRQ9H7M9 311 aa7.94□□□□□ -1.14
VPS4B-202ENST00000588059 TRAV2A0A0B4J234 112 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 CEBPZOSA8MTT3 80 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 DNASE2O00115 360 aaPredicted RBP7.93□□□□□ -1.14
VPS4B-202ENST00000588059 APOHP02749 345 aaPredicted RBP7.93□□□□□ -1.14
VPS4B-202ENST00000588059 CD5P06127 495 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 SPP1P10451 314 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 ANXA3P12429 323 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 SPCS3P61009 180 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 TRIQKQ629K1 86 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 MORN3Q6PF18 240 aaPredicted RBP7.93□□□□□ -1.14
VPS4B-202ENST00000588059 CSNK1G2-AS1Q8NCQ2 148 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 DUSP18Q8NEJ0 188 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 TXN2Q99757 166 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 CLEC5AQ9NY25 188 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 TBC1D24Q9ULP9 559 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 TMEM56-RWDD3S4R434 201 aa7.93□□□□□ -1.14
VPS4B-202ENST00000588059 APOBP04114 4563 aaKnown RBP7.92□□□□□ -1.14
VPS4B-202ENST00000588059 INS-IGF2F8WCM5 200 aa7.92□□□□□ -1.14
VPS4B-202ENST00000588059 IFNA10P01566 189 aa7.92□□□□□ -1.14
VPS4B-202ENST00000588059 RNASE2P10153 161 aaKnown RBP7.92□□□□□ -1.14
VPS4B-202ENST00000588059 OPRK1P41145 380 aa7.92□□□□□ -1.14
VPS4B-202ENST00000588059 NPBWR1P48145 328 aa7.92□□□□□ -1.14
VPS4B-202ENST00000588059 SOHLH1Q5JUK2 328 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms