RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 RNF212Q495C1 297 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 THYN1Q9P016 225 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 TRAV30A0A087WSZ9 112 aa11.23□□□□□ -0.61
LIG3-205ENST00000585941 TRAV20A0A0B4J274 112 aa11.23□□□□□ -0.61
LIG3-205ENST00000585941 FOLR2P14207 255 aa11.23□□□□□ -0.61
LIG3-205ENST00000585941 ZNF48Q96MX3 618 aaPredicted RBP11.23□□□□□ -0.61
LIG3-205ENST00000585941 A0A1W2PRE2 83 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 A1L4Q6 167 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 K7EIM0 57 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 HYPMO75409 117 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 IGLC1P0CG04 106 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 FBLN7Q53RD9 439 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 FAM120AOSQ5T036 256 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 PATE2Q6UY27 113 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 C19orf35Q6ZS72 473 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 HIST1H2BAQ96A08 127 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 C11orf52Q96A22 123 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 FAM167A-AS1Q96KT0 104 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 TMEM68Q96MH6 324 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 RBM14Q96PK6 669 aaKnown RBP11.22□□□□□ -0.61
LIG3-205ENST00000585941 MEGF9Q9H1U4 602 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 ZNF355PQ9NSJ1 428 aa11.22□□□□□ -0.61
LIG3-205ENST00000585941 YTHDF2Q9Y5A9 579 aaKnown RBP11.22□□□□□ -0.61
LIG3-205ENST00000585941 IGLV11-55A0A075B6I3 123 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 IGHV7-81A0A0B4J1V7 117 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 CLDN34H7C241 214 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 SCGB2A1O75556 95 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 NDUFB4O95168 129 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 HIST1H1BP16401 226 aaKnown RBP11.21□□□□□ -0.61
LIG3-205ENST00000585941 ADIRFQ15847 76 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 OR5AU1Q8NGC0 362 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 OR51G1Q8NGK1 321 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 ZNF503Q96F45 646 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 FAM103A1Q9BTL3 118 aaKnown RBP11.21□□□□□ -0.61
LIG3-205ENST00000585941 SLC25A2Q9BXI2 301 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 C7orf69Q9H7B7 122 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 BEX4Q9NWD9 120 aaPredicted RBP11.21□□□□□ -0.61
LIG3-205ENST00000585941 MLXQ9UH92 298 aa11.21□□□□□ -0.61
LIG3-205ENST00000585941 TRAV40A0A0B4J280 105 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 NPPCP23582 126 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 RPL23P62829 140 aaKnown RBP11.2□□□□□ -0.62
LIG3-205ENST00000585941 UBE2L3P68036 154 aaKnown RBP11.2□□□□□ -0.62
LIG3-205ENST00000585941 FLI1Q01543 452 aaPredicted RBP11.2□□□□□ -0.62
LIG3-205ENST00000585941 ASPHD1Q5U4P2 390 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 LINC00305Q7Z4B0 112 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 S100A7AQ86SG5 101 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 SGMS2Q8NHU3 365 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 ISOC2Q96AB3 205 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 PAXXQ9BUH6 204 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 IGHV3-21A0A0B4J1V1 117 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 LOC105371267A0A1B0GV96 52 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 ORM2P19652 201 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 MFAP4P55083 255 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 NDPQ00604 133 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 FAM24BQ8N5W8 94 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 OR1B1Q8NGR6 318 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 YPEL4Q96NS1 127 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 FANCD2OSQ96PS1 177 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 TCEAL7Q9BRU2 100 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 OR51M1Q9H341 326 aa11.2□□□□□ -0.62
LIG3-205ENST00000585941 CRYBA1P05813 215 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 RD3LP0DJH9 198 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 EGR2P11161 476 aaPredicted RBP11.19□□□□□ -0.62
LIG3-205ENST00000585941 CD99P14209 185 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 RAB5AP20339 215 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 KIAA0141Q14154 515 aaPredicted RBP11.19□□□□□ -0.62
LIG3-205ENST00000585941 KLK9Q2XQG4 91 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 RUSC1-AS1Q66K80 236 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 LRRC75A-AS1Q8N1F1 130 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 LINC01356Q8N9X3 169 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 FAM110DQ8TAY7 271 aaPredicted RBP11.19□□□□□ -0.62
LIG3-205ENST00000585941 NRGNQ92686 78 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 ANAPC16Q96DE5 110 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 ASH1LQ9NR48 2969 aaKnown RBP11.19□□□□□ -0.62
LIG3-205ENST00000585941 HIF1ANQ9NWT6 349 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 KLK9Q9UKQ9 250 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 HIGD1AQ9Y241 93 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 MOB4Q9Y3A3 225 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 LY96Q9Y6Y9 160 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 ABCA1O95477 2261 aa11.19□□□□□ -0.62
LIG3-205ENST00000585941 ANKRD17O75179 2603 aaKnown RBP11.18□□□□□ -0.62
LIG3-205ENST00000585941 SCO2A0A1W2PP80 73 aa11.18□□□□□ -0.62
LIG3-205ENST00000585941 J3QLI3 93 aa11.18□□□□□ -0.62
LIG3-205ENST00000585941 IGKV1-17P01599 117 aa11.18□□□□□ -0.62
LIG3-205ENST00000585941 PSG1P11464 419 aa11.18□□□□□ -0.62
LIG3-205ENST00000585941 YPEL3P61236 119 aaPredicted RBP11.18□□□□□ -0.62
LIG3-205ENST00000585941 TMEM190Q8WZ59 177 aa11.18□□□□□ -0.62
LIG3-205ENST00000585941 TXN2Q99757 166 aa11.18□□□□□ -0.62
LIG3-205ENST00000585941 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.17□□□□□ -0.628e-8■■■■□ 23.7
LIG3-205ENST00000585941 TRAV5A0A0B4J249 113 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 C9JCJ5 164 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 TOMM40O96008 361 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 OR10J4P0C629 311 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 TIGITQ495A1 244 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 MORN5Q5VZ52 161 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 C16orf82Q7Z2V1 217 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 C5orf56Q8N8D9 126 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 VN1R17PQ8TDU5 208 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 C1orf196B1AJZ1 125 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 PPP1R2P9O14990 202 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms