RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 DSCAML1Q8TD84 2053 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 INS-IGF2F8WCM5 200 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 NPFFO15130 113 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 NBR2O15453 112 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 MPDU1O75352 247 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 CNIH1O95406 144 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 CA2P00918 260 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 IGKV1D-33P01593 117 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 IGKV1-33P01594 117 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 IGLV2-23P01705 113 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 MBP02144 154 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 FGF7P21781 194 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 RPL27AP46776 148 aaKnown RBP8.07□□□□□ -1.12
SS18-221ENST00000582448 GNB1P62873 340 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 PRSS8Q16651 343 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 HCP5Q6MZN7 132 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 IL34Q6ZMJ4 242 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 Q6ZRG5 221 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 LHFPL4Q7Z7J7 247 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 FAM213BQ8TBF2 198 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 MARC2Q969Z3 335 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 WDR61Q9GZS3 305 aaKnown RBP8.07□□□□□ -1.12
SS18-221ENST00000582448 SH3BGRL3Q9H299 93 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 HRH4Q9H3N8 390 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 NDUFA4L2Q9NRX3 87 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 SIGLEC9Q9Y336 463 aa8.07□□□□□ -1.12
SS18-221ENST00000582448 RRHO14718 337 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 ARL16Q0P5N6 197 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 HABP2Q14520 560 aaPredicted RBP8.06□□□□□ -1.12
SS18-221ENST00000582448 C2orf83Q53S99 150 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 PXDC1Q5TGL8 231 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 UQCC3Q6UW78 93 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 COMMD1Q8N668 190 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 LFNGQ8NES3 379 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 NPVFQ9HCQ7 196 aa8.06□□□□□ -1.12
SS18-221ENST00000582448 RAB19A4D1S5 217 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 MFSD2BA6NFX1 497 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 NCBP2LA6PVI3 153 aaKnown RBP8.05□□□□□ -1.12
SS18-221ENST00000582448 DIRC3C9JPN6 131 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 FNDC10F2Z333 226 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 I3L521 148 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 CYB5BO43169 146 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 HBE1P02100 147 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 FBP1P09467 338 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 OR13C7P0DN81 318 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 TMEM11P17152 192 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 SAA4P35542 130 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 RUNX1Q01196 453 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 AKR1C1Q04828 323 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 HNF4GQ14541 408 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 VWC2Q2TAL6 325 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 NSUN5P1Q3KNT7 163 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 ETFRF1Q6IPR1 90 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 BTNL8Q6UX41 500 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 HAPLN4Q86UW8 402 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 NPBQ8NG41 125 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 RNASEH2CQ8TDP1 164 aaKnown RBP8.05□□□□□ -1.12
SS18-221ENST00000582448 RITA1Q96K30 269 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 SLC35E1Q96K37 410 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 FAM210AQ96ND0 272 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 SRSF8Q9BRL6 282 aaKnown RBP8.05□□□□□ -1.12
SS18-221ENST00000582448 FBXL15Q9H469 300 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 VPREB3Q9UKI3 123 aa8.05□□□□□ -1.12
SS18-221ENST00000582448 TET2Q6N021 2002 aaPredicted RBP8.04□□□□□ -1.12
SS18-221ENST00000582448 GAGE12BA1L429 117 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 GAGE12HA6NDE8 117 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 PMS2P5A8MQ11 134 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 KRBOX1C9JBD0 128 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 CORTO00230 105 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 CRYGBP07316 175 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 MYOD1P15172 320 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 PJVKQ0ZLH3 352 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 LY6EQ16553 131 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 AANATQ16613 207 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 TMEM41BQ5BJD5 291 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 KPRPQ5T749 579 aaPredicted RBP8.04□□□□□ -1.12
SS18-221ENST00000582448 EIF4E3Q8N5X7 224 aaKnown RBP8.04□□□□□ -1.12
SS18-221ENST00000582448 OR1L6Q8NGR2 347 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 ABHD5Q8WTS1 349 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 CACNG8Q8WXS5 425 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 RSG1Q9BU20 258 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 PBDC1Q9BVG4 233 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 WDR83OSQ9Y284 106 aa8.04□□□□□ -1.12
SS18-221ENST00000582448 NDUFA3O95167 84 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 RNASE2P10153 161 aaKnown RBP8.03□□□□□ -1.12
SS18-221ENST00000582448 CNTFRP26992 372 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 GPX4P36969 197 aaPredicted RBP8.03□□□□□ -1.12
SS18-221ENST00000582448 EBI3Q14213 229 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 C5orf64Q2M2E5 130 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 ACOT6Q3I5F7 207 aaPredicted RBP8.03□□□□□ -1.12
SS18-221ENST00000582448 CENPVQ7Z7K6 275 aaPredicted RBP8.03□□□□□ -1.12
SS18-221ENST00000582448 KLHDC1Q8N7A1 406 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 OR10W1Q8NGF6 305 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 RBMXL1Q96E39 390 aaKnown RBP8.03□□□□□ -1.12
SS18-221ENST00000582448 NARS2Q96I59 477 aaKnown RBP8.03□□□□□ -1.12
SS18-221ENST00000582448 RASL11BQ9BPW5 248 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 NPCDR1Q9BY65 106 aa8.03□□□□□ -1.12
SS18-221ENST00000582448 ELANEP08246 267 aa8.02□□□□□ -1.13
SS18-221ENST00000582448 DEFA4P12838 97 aa8.02□□□□□ -1.13
SS18-221ENST00000582448 OPRK1P41145 380 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms