RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 PRSS3P35030 304 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 HSPA13P48723 471 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 HOXA1P49639 335 aaPredicted RBP7.05□□□□□ -1.28
RFFL-208ENST00000581039 FXYD7P58549 80 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 GABARAPL2P60520 117 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 OXA1LQ15070 435 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 TMEM88Q6PEY1 159 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 Q8N1X5 172 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 ATG101Q9BSB4 218 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 VCX3BQ9H321 246 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 SCRT2Q9NQ03 307 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 HLA-DRB4X5D2U9 266 aa7.05□□□□□ -1.28
RFFL-208ENST00000581039 RPS10-NUDT3A0A1W2PQS6 291 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 ATG12O94817 140 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 IGKV1-5P01602 117 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 NKX2-1P43699 371 aaPredicted RBP7.04□□□□□ -1.28
RFFL-208ENST00000581039 AKR1C2P52895 323 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 UCP3P55916 312 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 YPEL3P61236 119 aaPredicted RBP7.04□□□□□ -1.28
RFFL-208ENST00000581039 DHODHQ02127 395 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 UBE2NLQ5JXB2 153 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 IZUMO2Q6UXV1 221 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 SIGLEC15Q6ZMC9 328 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 OR1S2Q8NGQ3 325 aa7.04□□□□□ -1.28
RFFL-208ENST00000581039 C7orf50Q9BRJ6 194 aaKnown RBP7.04□□□□□ -1.28
RFFL-208ENST00000581039 YTHDF1Q9BYJ9 559 aaKnown RBP7.04□□□□□ -1.28
RFFL-208ENST00000581039 NBDYA0A0U1RRE5 68 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 GSTZ1O43708 216 aaPredicted RBP7.03□□□□□ -1.28
RFFL-208ENST00000581039 HBE1P02100 147 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 IL4P05112 153 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 IGLC1P0CG04 106 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 PGAM2P15259 253 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 OR10J1P30954 320 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 DAD1P61803 113 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 GSG1LQ6UXU4 331 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 CROCCP3Q8IVE0 287 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 C6orf223Q8N319 242 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 SAMD12Q8N8I0 201 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 C15orf53Q8NAA6 179 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 OR4B1Q8NGF8 309 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 LINC00052Q96N35 136 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 GOLT1BQ9Y3E0 138 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 YTHDF2Q9Y5A9 579 aaKnown RBP7.03□□□□□ -1.28
RFFL-208ENST00000581039 LRP1BQ9NZR2 4599 aa7.03□□□□□ -1.28
RFFL-208ENST00000581039 LOC102723971A0A1B0GUV8 181 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 ANKRD65E5RJM6 399 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 BUB3O43684 328 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 P0C879 139 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 RD3LP0DJH9 198 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 SLC25A4P12235 298 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 ID1P41134 155 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 HTR2BP41595 481 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 RND2P52198 227 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 USF2Q15853 346 aaPredicted RBP7.02□□□□□ -1.29
RFFL-208ENST00000581039 RRN3P1Q2M238 152 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 GDF5OSQ5U4N7 250 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 PRSS54Q6PEW0 395 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 RRNAD1Q96FB5 475 aaKnown RBP7.02□□□□□ -1.29
RFFL-208ENST00000581039 SAV1Q9H4B6 383 aaPredicted RBP7.02□□□□□ -1.29
RFFL-208ENST00000581039 HERC1Q15751 4861 aa7.02□□□□□ -1.29
RFFL-208ENST00000581039 C3orf85A0A1B0GTC6 90 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 PIGPP57054 158 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 DEFB1P60022 68 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 SPCS3P61009 180 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 RND3P61587 244 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 PSG9Q00887 426 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 TRIM16LQ309B1 348 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 BSXQ3C1V8 233 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 ETFRF1Q6IPR1 90 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 FOXI2Q6ZQN5 318 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 RNASE11Q8TAA1 199 aaKnown RBP7.01□□□□□ -1.29
RFFL-208ENST00000581039 GPX8Q8TED1 209 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 ZNF486Q96H40 463 aaPredicted RBP7.01□□□□□ -1.29
RFFL-208ENST00000581039 CLUHP3Q96NS8 147 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 TP53RKQ96S44 253 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 HEYLQ9NQ87 328 aaPredicted RBP7.01□□□□□ -1.29
RFFL-208ENST00000581039 KLK11Q9UBX7 282 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 PFDN2Q9UHV9 154 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 RAB26Q9ULW5 256 aa7.01□□□□□ -1.29
RFFL-208ENST00000581039 SMIM31A0A1B0GVY4 71 aa7□□□□□ -1.29
RFFL-208ENST00000581039 PI3P19957 117 aa7□□□□□ -1.29
RFFL-208ENST00000581039 RCVRNP35243 200 aa7□□□□□ -1.29
RFFL-208ENST00000581039 NUP62P37198 522 aaPredicted RBP7□□□□□ -1.29
RFFL-208ENST00000581039 CCL18P55774 89 aa7□□□□□ -1.29
RFFL-208ENST00000581039 C2orf83Q53S99 150 aa7□□□□□ -1.29
RFFL-208ENST00000581039 SPATA31B1PQ5VZV4 182 aa7□□□□□ -1.29
RFFL-208ENST00000581039 EBLN2Q6P2I7 272 aa7□□□□□ -1.29
RFFL-208ENST00000581039 SPATA12Q7Z6I5 190 aa7□□□□□ -1.29
RFFL-208ENST00000581039 C1orf158Q8N1D5 194 aa7□□□□□ -1.29
RFFL-208ENST00000581039 ZNF709Q8N972 641 aa7□□□□□ -1.29
RFFL-208ENST00000581039 ZNRF2Q8NHG8 242 aa7□□□□□ -1.29
RFFL-208ENST00000581039 COQ8AQ8NI60 647 aa7□□□□□ -1.29
RFFL-208ENST00000581039 RNASEH2CQ8TDP1 164 aaKnown RBP7□□□□□ -1.29
RFFL-208ENST00000581039 NPIPB3Q92617 1050 aa7□□□□□ -1.29
RFFL-208ENST00000581039 TMEM208Q9BTX3 173 aa7□□□□□ -1.29
RFFL-208ENST00000581039 MAGT1Q9H0U3 335 aa7□□□□□ -1.29
RFFL-208ENST00000581039 SLC35B3Q9H1N7 401 aa7□□□□□ -1.29
RFFL-208ENST00000581039 SCPEP1Q9HB40 452 aa7□□□□□ -1.29
RFFL-208ENST00000581039 CTNNBIP1Q9NSA3 81 aaPredicted RBP7□□□□□ -1.29
RFFL-208ENST00000581039 NACAE9PAV3 2078 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms