RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PRR20EP86478 221 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 PRR20CP86479 221 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 PRR20DP86480 221 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 PRR20BP86481 221 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 PRR20AP86496 221 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 SPSB3Q6PJ21 355 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 MYOZ3Q8TDC0 251 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 TMED6Q8WW62 240 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 MGST2Q99735 147 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 GGTLC1Q9BX51 225 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 SLC45A2Q9UMX9 530 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 IGKV1OR2-108A0A075B7D4 117 aa11.89□□□□□ -0.51
SS18-215ENST00000580642 GNG7O60262 68 aa11.89□□□□□ -0.51
SS18-215ENST00000580642 TSPAN15O95858 294 aa11.89□□□□□ -0.51
SS18-215ENST00000580642 OR10J1P30954 320 aa11.89□□□□□ -0.51
SS18-215ENST00000580642 SULT1A2P50226 295 aa11.89□□□□□ -0.51
SS18-215ENST00000580642 CYP2G1PQ6ZSU1 146 aa11.89□□□□□ -0.51
SS18-215ENST00000580642 FN1P02751 2386 aaKnown RBP11.89□□□□□ -0.51
SS18-215ENST00000580642 IGKV1D-37A0A075B6S9 117 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 MFSD2BA6NFX1 497 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 NUPL2O15504 423 aaKnown RBP11.88□□□□□ -0.51
SS18-215ENST00000580642 RAB14P61106 215 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 RUNX1Q01196 453 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 TMEM95Q3KNT9 176 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 AKR1C8PQ5T2L2 129 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 ALKAL2Q6UX46 152 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 Q6ZRG5 221 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 WIPF2Q8TF74 440 aaPredicted RBP11.88□□□□□ -0.51
SS18-215ENST00000580642 SAT2Q96F10 170 aaPredicted RBP11.88□□□□□ -0.51
SS18-215ENST00000580642 UBE2E2Q96LR5 201 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 MS4A10Q96PG2 267 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 RSG1Q9BU20 258 aa11.88□□□□□ -0.51
SS18-215ENST00000580642 MRPL36Q9P0J6 103 aaKnown RBP11.88□□□□□ -0.51
SS18-215ENST00000580642 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.87□□□□□ -0.51
SS18-215ENST00000580642 F8W735 103 aaPredicted RBP11.87□□□□□ -0.51
SS18-215ENST00000580642 PLP1P60201 277 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 ACOT6Q3I5F7 207 aaPredicted RBP11.87□□□□□ -0.51
SS18-215ENST00000580642 Q56UQ5 140 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 ZNF343Q6P1L6 599 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 S100A7AQ86SG5 101 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 KLHDC1Q8N7A1 406 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 BPIFCQ8NFQ6 507 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 OR4X2Q8NGF9 303 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 LINC01006Q8NI28 216 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 SH3BGRL3Q9H299 93 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 SLC39A9Q9NUM3 307 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 PXMP4Q9Y6I8 212 aa11.87□□□□□ -0.51
SS18-215ENST00000580642 ELOA3CA0A087WX78 387 aaPredicted RBP11.86□□□□□ -0.51
SS18-215ENST00000580642 TOMM40O96008 361 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 IGKV1-17P01599 117 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 CTSGP08311 255 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 M6PRP20645 277 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 S100A7P31151 101 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 B2MP61769 119 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 BLOC1S1P78537 153 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 TMEM41BQ5BJD5 291 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 ZNF329Q86UD4 541 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 STPG3Q8N7X2 389 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 OR1L4Q8NGR5 311 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 Q8WTZ3 238 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 RNF2Q99496 336 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 KLK15Q9H2R5 256 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 RNF24Q9Y225 148 aa11.86□□□□□ -0.51
SS18-215ENST00000580642 IGHV3-21A0A0B4J1V1 117 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 CLPSL1A2RUU4 121 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 TGOLN2O43493 480 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 OR2C1O95371 312 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 IGHV3-48P01763 117 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 CLEC3BP05452 202 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 LINC00869P0C866 280 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 RD3LP0DJH9 198 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 RELQ04864 619 aaPredicted RBP11.85□□□□□ -0.51
SS18-215ENST00000580642 ZNF616Q08AN1 781 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 KIAA0141Q14154 515 aaPredicted RBP11.85□□□□□ -0.51
SS18-215ENST00000580642 CLLU1Q5K131 121 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 FFAR4Q5NUL3 377 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 ZNF491Q8N8L2 437 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 OR5AU1Q8NGC0 362 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 GATAD1Q8WUU5 269 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 CCDC140Q96MF4 163 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 PFDN5Q99471 154 aa11.85□□□□□ -0.51
SS18-215ENST00000580642 CDX1P47902 265 aaPredicted RBP11.84□□□□□ -0.51
SS18-215ENST00000580642 MIC13Q5XKP0 118 aa11.84□□□□□ -0.51
SS18-215ENST00000580642 ZNF600Q6ZNG1 722 aa11.84□□□□□ -0.51
SS18-215ENST00000580642 TMEM182Q6ZP80 229 aaPredicted RBP11.84□□□□□ -0.51
SS18-215ENST00000580642 OR51G1Q8NGK1 321 aa11.84□□□□□ -0.51
SS18-215ENST00000580642 SEC14L6B5MCN3 397 aa11.83□□□□□ -0.52
SS18-215ENST00000580642 TEX46H3BTG2 121 aa11.83□□□□□ -0.52
SS18-215ENST00000580642 PSG1P11464 419 aa11.83□□□□□ -0.52
SS18-215ENST00000580642 ZNF90Q03938 601 aa11.83□□□□□ -0.52
SS18-215ENST00000580642 ACTR3CQ9C0K3 210 aaPredicted RBP11.83□□□□□ -0.52
SS18-215ENST00000580642 RPRMQ9NS64 109 aa11.83□□□□□ -0.52
SS18-215ENST00000580642 TRAV1-1A0A0B4J248 108 aa11.82□□□□□ -0.52
SS18-215ENST00000580642 OR2T8A6NH00 312 aa11.82□□□□□ -0.52
SS18-215ENST00000580642 YIF1AO95070 293 aa11.82□□□□□ -0.52
SS18-215ENST00000580642 LGALS1P09382 135 aaKnown RBP11.82□□□□□ -0.52
SS18-215ENST00000580642 GPR183P32249 361 aa11.82□□□□□ -0.52
SS18-215ENST00000580642 PROK1P58294 105 aa11.82□□□□□ -0.52
SS18-215ENST00000580642 RHOBP62745 196 aa11.82□□□□□ -0.52
SS18-215ENST00000580642 TIGITQ495A1 244 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms