RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 BPIFCQ8NFQ6 507 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 VN1R17PQ8TDU5 208 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 OR5B12Q96R08 314 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 TRBV12-3P01733 135 aa19.46■□□□□ 0.71
SHMT1-207ENST00000580002 TCTEX1D4Q5JR98 221 aa19.46■□□□□ 0.71
SHMT1-207ENST00000580002 CLEC19AQ6UXS0 136 aa19.46■□□□□ 0.71
SHMT1-207ENST00000580002 KLHDC1Q8N7A1 406 aa19.46■□□□□ 0.71
SHMT1-207ENST00000580002 GNPNAT1Q96EK6 184 aaPredicted RBP19.46■□□□□ 0.71
SHMT1-207ENST00000580002 CHRDL1Q9BU40 450 aa19.46■□□□□ 0.71
SHMT1-207ENST00000580002 H3BUA1 57 aa19.45■□□□□ 0.7
SHMT1-207ENST00000580002 YIF1AO95070 293 aa19.45■□□□□ 0.7
SHMT1-207ENST00000580002 BRI3O95415 125 aa19.45■□□□□ 0.7
SHMT1-207ENST00000580002 CLEC3BP05452 202 aa19.45■□□□□ 0.7
SHMT1-207ENST00000580002 ZNF414Q96IQ9 312 aa19.45■□□□□ 0.7
SHMT1-207ENST00000580002 C16orf95Q9H693 158 aa19.45■□□□□ 0.7
SHMT1-207ENST00000580002 IGHV3-35A0A0C4DH35 117 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 IFNA7P01567 189 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 GPR183P32249 361 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 RPL15P61313 204 aaKnown RBP19.44■□□□□ 0.7
SHMT1-207ENST00000580002 TEX38Q6PEX7 206 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 CYP2G1PQ6ZSU1 146 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 STPG3Q8N7X2 389 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 PHYHIPLQ96FC7 376 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 UBQLN2Q9UHD9 624 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 PXMP4Q9Y6I8 212 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 FAM223BA6NKX1 122 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 MPDU1O75352 247 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 CTSGP08311 255 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 ADMP35318 185 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 SLC35B1P78383 322 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 FFAR4Q5NUL3 377 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 FAM223AQ8IWN6 122 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 ZNF709Q8N972 641 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 OR5AU1Q8NGC0 362 aa19.44■□□□□ 0.7
SHMT1-207ENST00000580002 PSMG3Q9BT73 122 aaPredicted RBP19.44■□□□□ 0.7
SHMT1-207ENST00000580002 TCRBV4S1A1TA0A5B7 111 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 RGS13O14921 159 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 GNG7O60262 68 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 RAB2AP61019 212 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 PRR20EP86478 221 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 PRR20CP86479 221 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 PRR20DP86480 221 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 PRR20BP86481 221 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 PRR20AP86496 221 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 C18orf65Q6ZTR6 163 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 C11orf44Q8N8P7 122 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 TIMM9Q9Y5J7 89 aa19.43■□□□□ 0.7
SHMT1-207ENST00000580002 PPP5D1E7EU14 171 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 HAX1O00165 279 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 NPBWR1P48145 328 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 WIPF2Q8TF74 440 aaPredicted RBP19.42■□□□□ 0.7
SHMT1-207ENST00000580002 EEF1AKMT3Q96AZ1 226 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 CXorf58Q96LI9 332 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 TRGV9Q99603 122 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 ANKRD34BA5PLL1 514 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 B2MP61769 119 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 FOXE3Q13461 319 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 GNB4Q9HAV0 340 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 RPRMQ9NS64 109 aa19.42■□□□□ 0.7
SHMT1-207ENST00000580002 C17orf112F2Z3M2 114 aa19.41■□□□□ 0.7
SHMT1-207ENST00000580002 RPL29P47914 159 aaKnown RBP19.41■□□□□ 0.7
SHMT1-207ENST00000580002 SULT1A2P50226 295 aa19.41■□□□□ 0.7
SHMT1-207ENST00000580002 ZNF491Q8N8L2 437 aa19.41■□□□□ 0.7
SHMT1-207ENST00000580002 SLC39A9Q9NUM3 307 aa19.41■□□□□ 0.7
SHMT1-207ENST00000580002 NDUFA7O95182 113 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 ELANEP08246 267 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 PSG1P11464 419 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 RAB31Q13636 194 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 ZNF767PQ75MW2 155 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 SSX7Q7RTT5 188 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 OR4X2Q8NGF9 303 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 USMG5Q96IX5 58 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 DOK5Q9P104 306 aa19.4■□□□□ 0.7
SHMT1-207ENST00000580002 FCGR2BP31994 310 aaPredicted RBP19.39■□□□□ 0.7
SHMT1-207ENST00000580002 MYOZ3Q8TDC0 251 aa19.39■□□□□ 0.7
SHMT1-207ENST00000580002 TRBV7-1A0A0A6YYK4 115 aa19.39■□□□□ 0.69
SHMT1-207ENST00000580002 TMEM89A2RUT3 159 aa19.39■□□□□ 0.69
SHMT1-207ENST00000580002 EIF5AL1Q6IS14 154 aaKnown RBP19.39■□□□□ 0.69
SHMT1-207ENST00000580002 TXN2Q99757 166 aa19.39■□□□□ 0.69
SHMT1-207ENST00000580002 IGHV3OR16-8A0A075B7F1 116 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 TSPAN15O95858 294 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 SERF2P84101 59 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 ZNF616Q08AN1 781 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 ZNF726P1Q15940 193 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 AKR1C8PQ5T2L2 129 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 ZNF343Q6P1L6 599 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 RPP25LQ8N5L8 163 aaKnown RBP19.38■□□□□ 0.69
SHMT1-207ENST00000580002 RNF152Q8N8N0 203 aa19.38■□□□□ 0.69
SHMT1-207ENST00000580002 CD28P10747 220 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 SPATA31B1PQ5VZV4 182 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 PATE2Q6UY27 113 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP19.37■□□□□ 0.69
SHMT1-207ENST00000580002 FAM213BQ8TBF2 198 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 RNF114Q9Y508 228 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 ZNF705EA8MWA4 302 aaPredicted RBP19.37■□□□□ 0.69
SHMT1-207ENST00000580002 NMBP08949 121 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 RD3LP0DJH9 198 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 TMEM37Q8WXS4 190 aa19.37■□□□□ 0.69
SHMT1-207ENST00000580002 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP19.36■□□□□ 0.69
SHMT1-207ENST00000580002 A0A0G2JLM5 398 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms