RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 DEFB103AP81534 67 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 DHRS2Q13268 280 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 KIAA0040Q15053 153 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 PDGFRLQ15198 375 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 CST6Q15828 149 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 LINC00303Q3SY05 128 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 SCGB2B2Q4G0G5 96 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 CCSMST1Q4G0I0 132 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 GLYATL3Q5SZD4 288 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 NOXRED1Q6NXP6 359 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 RASL11AQ6T310 242 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 LINC01551Q86U37 167 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 ZNF429Q86V71 674 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 OR8I2Q8N0Y5 310 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 RHOXF1Q8NHV9 184 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 TYMSOSQ8TAI1 123 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 WFDC5Q8TCV5 224 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 LMX1AQ8TE12 382 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 ORAOV1Q8WV07 137 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 ITLN1Q8WWA0 313 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 ISOC1Q96CN7 298 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 TEX37Q96LM6 180 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 HSD17B10Q99714 261 aaKnown RBP2.4□□□□□ -2.03
NUP88-209ENST00000574855 OR8D2Q9GZM6 311 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 COMMD5Q9GZQ3 224 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 IFI27L2Q9H2X8 130 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 MRPL16Q9NX20 251 aaKnown RBP2.4□□□□□ -2.03
NUP88-209ENST00000574855 DEC1Q9P2X7 70 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 TPRKBQ9Y3C4 175 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 FLVCR1Q9Y5Y0 555 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 HSPE1-MOB4S4R3N1 261 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 TET2Q6N021 2002 aaPredicted RBP2.4□□□□□ -2.03
NUP88-209ENST00000574855 ATG2AQ2TAZ0 1938 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 SHROOM3Q8TF72 1996 aa2.4□□□□□ -2.03
NUP88-209ENST00000574855 PLXNA3P51805 1871 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 NLRC5Q86WI3 1866 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 LOC102724200A0A096LPH7 203 aaPredicted RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 IGHV3-35A0A0C4DH35 117 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 IGHV1-69-2A0A0G2JMI3 117 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 LOC100130705A0A1B0GUX0 176 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 TMEM269A0A1B0GVZ9 245 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 A8MUN3 132 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 KRBOX1C9JBD0 128 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 OVOL1O14753 267 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 OR7C2O60412 319 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PGLYRP1O75594 196 aaPredicted RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 DEDDO75618 318 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 CPSF4O95639 269 aaKnown RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 SCGB1C2P0DMR2 95 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 TDGF1P13385 188 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PGAM2P15259 253 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 IMPA1P29218 277 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 CCR2P41597 374 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 INPP1P49441 399 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 TDGF1P3P51864 188 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 TMBIM6P55061 237 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 SMIM11AP58511 58 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 GABARAPL2P60520 117 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 HERVK_113P61574 105 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PKIAP61925 76 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PPP3R1P63098 170 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PSG7Q13046 419 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 RSPO1Q2MKA7 263 aaPredicted RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 ORMDL2Q53FV1 153 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 TMEM69Q5SWH9 247 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 CASC10Q5T4H9 136 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 Q5XG85 94 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 EBLN2Q6P2I7 272 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 CEMP1Q6PRD7 247 aaPredicted RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 Q6Q795 121 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 LINC00299Q6ZSB3 139 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 HSD17B13Q7Z5P4 300 aaPredicted RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 LRP11Q86VZ4 500 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 C1orf174Q8IYL3 243 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 TCTE3Q8IZS6 198 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 SLC22A24Q8N4F4 322 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 ZNF645Q8N7E2 425 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 LINC01555Q8NAE3 123 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 OR2M3Q8NG83 312 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 OR4E2Q8NGC2 313 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 OR51T1Q8NGJ9 327 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 SCGB1C1Q8TD33 95 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 ZNF721Q8TF20 911 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 RAB2BQ8WUD1 216 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 FAM104AQ969W3 186 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 HIST1H2BAQ96A08 127 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 GNPNAT1Q96EK6 184 aaPredicted RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 YPEL4Q96NS1 127 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 SMIM14Q96QK8 99 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 CCL13Q99616 98 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PRADC1Q9BSG0 188 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 MED28Q9H204 178 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 LINC00597Q9H2U6 94 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 C11orf68Q9H3H3 251 aaKnown RBP2.39□□□□□ -2.03
NUP88-209ENST00000574855 CST9LQ9H4G1 147 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PLEKHF2Q9H8W4 249 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 CA10Q9NS85 328 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 FBXL12Q9NXK8 326 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 ZFP30Q9Y2G7 519 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PATJQ8NI35 1801 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms