RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 HIST1H2BOP23527 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST1H2BBP33778 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST1H2BDP58876 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST1H2BCP62807 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 SUMO1P63165 101 aaKnown RBP11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST2H2BEQ16778 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.18□□□□□ -0.62
VPS33B-208ENST00000574755 KCNIP4Q6PIL6 250 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 OR1B1Q8NGR6 318 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 OR2T10Q8NGZ9 312 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST1H2BHQ93079 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST1H2BNQ99877 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 HIST1H2BMQ99879 126 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 SRSF8Q9BRL6 282 aaKnown RBP11.18□□□□□ -0.62
VPS33B-208ENST00000574755 PYGO2Q9BRQ0 406 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 WNT10AQ9GZT5 417 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 SIRPDQ9H106 197 aa11.18□□□□□ -0.62
VPS33B-208ENST00000574755 COL12A1Q99715 3063 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 PPP5D1E7EU14 171 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 PPP1R2P9O14990 202 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 PYYP10082 97 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 SRP14P37108 136 aaKnown RBP11.17□□□□□ -0.62
VPS33B-208ENST00000574755 NDUFA6P56556 154 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 PAX2Q02962 417 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 FXYD3Q14802 87 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 FBLN7Q53RD9 439 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 DYNAPQ8N1N2 210 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 FAM103A1Q9BTL3 118 aaKnown RBP11.17□□□□□ -0.62
VPS33B-208ENST00000574755 PAXXQ9BUH6 204 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 CSMD1Q96PZ7 3565 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 IGHV2-70DA0A0C4DH43 119 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 C9JCJ5 164 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 TOX4O94842 621 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 MINOS1Q5TGZ0 78 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 OR51M1Q9H341 326 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 GSX1Q9H4S2 264 aaPredicted RBP11.17□□□□□ -0.62
VPS33B-208ENST00000574755 SRD5A3Q9H8P0 318 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 MINOS1-NBL1R4GNA1 71 aa11.17□□□□□ -0.62
VPS33B-208ENST00000574755 HELTA6NFD8 242 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 NCBP2LA6PVI3 153 aaKnown RBP11.16□□□□□ -0.62
VPS33B-208ENST00000574755 OOSP1A8MZH6 123 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 OVOL3O00110 214 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 C5orf64Q2M2E5 130 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 FRZBQ92765 325 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 PERPQ96FX8 193 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 MED13LQ71F56 2210 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 ACACBO00763 2458 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 TRGC1P0CF51 173 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 FAM3BP58499 235 aaPredicted RBP11.16□□□□□ -0.62
VPS33B-208ENST00000574755 C12orf57Q99622 126 aa11.16□□□□□ -0.62
VPS33B-208ENST00000574755 SPTAN1Q13813 2472 aaKnown RBP11.15□□□□□ -0.62
VPS33B-208ENST00000574755 I3L2K1 104 aa11.15□□□□□ -0.62
VPS33B-208ENST00000574755 K7EN84 100 aa11.15□□□□□ -0.62
VPS33B-208ENST00000574755 GGCTO75223 188 aaKnown RBP11.15□□□□□ -0.62
VPS33B-208ENST00000574755 GNG4P50150 75 aa11.15□□□□□ -0.62
VPS33B-208ENST00000574755 LMO4P61968 165 aa11.15□□□□□ -0.62
VPS33B-208ENST00000574755 CENPWQ5EE01 88 aa11.15□□□□□ -0.62
VPS33B-208ENST00000574755 TEX38Q6PEX7 206 aa11.15□□□□□ -0.62
VPS33B-208ENST00000574755 HYPMO75409 117 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 LY96Q9Y6Y9 160 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 ABCA1O95477 2261 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 ZNF98A6NK75 572 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 IGHV4-39P01824 125 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 S100A8P05109 93 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 IGLC1P0CG04 106 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 OR10G8Q8NGN5 311 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 SGMS2Q8NHU3 365 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 RASL11BQ9BPW5 248 aa11.14□□□□□ -0.63
VPS33B-208ENST00000574755 A0A0U1RQK1 487 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 SNRPCP09234 159 aaKnown RBP11.13□□□□□ -0.63
VPS33B-208ENST00000574755 STXBP6Q8NFX7 210 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 FXYD5Q96DB9 178 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 IMMP2LQ96T52 175 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 TBL2Q9Y4P3 447 aaKnown RBP11.13□□□□□ -0.63
VPS33B-208ENST00000574755 PHOX2AO14813 284 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 PSG1P11464 419 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 TMEM11P17152 192 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 HOXA5P20719 270 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 MEOX2P50222 304 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 UBE2E1P51965 193 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 CX3CL1P78423 397 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 ZNF562Q6V9R5 426 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 OR1L6Q8NGR2 347 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 ARPC1AQ92747 370 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 TBX15Q96SF7 602 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 LPAR2Q9HBW0 351 aa11.13□□□□□ -0.63
VPS33B-208ENST00000574755 K7EIM0 57 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 PDLIM4P50479 330 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 LYZP61626 148 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 FOXL1Q12952 345 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 RBM14Q96PK6 669 aaKnown RBP11.12□□□□□ -0.63
VPS33B-208ENST00000574755 TCEAL7Q9BRU2 100 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 FLNCQ14315 2725 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 PLP1P60201 277 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 ERVFC1-1P60608 527 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 OR5I1Q13606 314 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 EBI3Q14213 229 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 TIGITQ495A1 244 aa11.12□□□□□ -0.63
VPS33B-208ENST00000574755 KLF17Q5JT82 389 aaPredicted RBP11.12□□□□□ -0.63
VPS33B-208ENST00000574755 Q8N6K4 173 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms