RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TRAV30A0A087WSZ9 112 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 TRAV14DV4A0A0A6YYC5 116 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 IGHV7-4-1A0A0J9YVY3 117 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 TSPAN4O14817 238 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 CLN5O75503 358 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 NXPH3O95157 252 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 NPY1RP25929 384 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 PAFAH1B2P68402 229 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 SMCO1Q147U7 214 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 RBMS2Q15434 407 aaKnown RBP6.08□□□□□ -1.44
VPS53-214ENST00000572607 HAGHQ16775 308 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 TMEM128Q5BJH2 165 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 LYZL2Q7Z4W2 148 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 CENPSQ8N2Z9 138 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 OR1S1Q8NH92 325 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 RNASEH2CQ8TDP1 164 aaKnown RBP6.08□□□□□ -1.44
VPS53-214ENST00000572607 NARS2Q96I59 477 aaKnown RBP6.08□□□□□ -1.44
VPS53-214ENST00000572607 RHPN1-AS1Q9BWJ2 59 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 KRTAP4-11Q9BYQ6 195 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 SRRQ9GZT4 340 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 TMEM231Q9H6L2 316 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 PRR13Q9NZ81 148 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 SMPXQ9UHP9 88 aa6.08□□□□□ -1.44
VPS53-214ENST00000572607 PLECQ15149 4684 aaKnown RBP6.07□□□□□ -1.44
VPS53-214ENST00000572607 LOC102724200A0A096LPH7 203 aaPredicted RBP6.07□□□□□ -1.44
VPS53-214ENST00000572607 A0A1B0GU03 582 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 C3orf84H3BNL1 204 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 TMEM50AO95807 157 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 IFNA10P01566 189 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 CD5P06127 495 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 SLC25A4P12235 298 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 CMC4P56277 68 aaPredicted RBP6.07□□□□□ -1.44
VPS53-214ENST00000572607 SUPT4H1P63272 117 aaKnown RBP6.07□□□□□ -1.44
VPS53-214ENST00000572607 TNFRSF9Q07011 255 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 BSXQ3C1V8 233 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 C2orf83Q53S99 150 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 PVRIGQ6DKI7 326 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 TOMM20LQ6UXN7 152 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 OR4X1Q8NH49 305 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 DTD1Q8TEA8 209 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 OR10C1Q96KK4 312 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 C7orf50Q9BRJ6 194 aaKnown RBP6.07□□□□□ -1.44
VPS53-214ENST00000572607 GGTLC1Q9BX51 225 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 WFDC10AQ9H1F0 79 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 PUS1Q9Y606 427 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS53-214ENST00000572607 U3KQ87 197 aa6.07□□□□□ -1.44
VPS53-214ENST00000572607 IGHV3-49A0A0A0MS15 119 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 LINC00854A0A1B0GVQ3 168 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 A0A1W2PS18 150 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 CHEK1O14757 476 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 MED6O75586 246 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 SFT2D2O95562 160 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 IFNA4P05014 189 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 ATP5IP56385 69 aaPredicted RBP6.06□□□□□ -1.44
VPS53-214ENST00000572607 UBE2MP61081 183 aaKnown RBP6.06□□□□□ -1.44
VPS53-214ENST00000572607 RAB11AP62491 216 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 NMSQ5H8A3 153 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 LRTM2Q8N967 370 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 OR1S2Q8NGQ3 325 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 Q8WTZ3 238 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 METTL26Q96S19 204 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 RNF2Q99496 336 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 RBKSQ9H477 322 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 HSPB7Q9UBY9 170 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 TMED3Q9Y3Q3 217 aa6.06□□□□□ -1.44
VPS53-214ENST00000572607 IGKV3-7A0A075B6H7 116 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 IGHV3OR16-13A0A075B7E8 117 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 IGHV3-74A0A0B4J1X5 117 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 FAM90A26D6RGX4 464 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 DNASE2O00115 360 aaPredicted RBP6.05□□□□□ -1.44
VPS53-214ENST00000572607 NDUFB6O95139 128 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 NPPCP23582 126 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 TFPI2P48307 235 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 EIF2B2P49770 351 aaKnown RBP6.05□□□□□ -1.44
VPS53-214ENST00000572607 RND2P52198 227 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 APOC4P55056 127 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 RPL11P62913 178 aaKnown RBP6.05□□□□□ -1.44
VPS53-214ENST00000572607 RPP30P78346 268 aaKnown RBP6.05□□□□□ -1.44
VPS53-214ENST00000572607 PPP1R1AQ13522 171 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 BAK1Q16611 211 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 CNPY1Q3B7I2 92 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 TIGITQ495A1 244 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 LINC00322Q6ZN03 302 aaPredicted RBP6.05□□□□□ -1.44
VPS53-214ENST00000572607 TCF24Q7RTU0 167 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 COQ8AQ8NI60 647 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 MUC7Q8TAX7 377 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 ACY3Q96HD9 319 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 GRAMD2BQ96HH9 432 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 SLC35E1Q96K37 410 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 FNDC4Q9H6D8 234 aaPredicted RBP6.05□□□□□ -1.44
VPS53-214ENST00000572607 UBQLN2Q9UHD9 624 aa6.05□□□□□ -1.44
VPS53-214ENST00000572607 PAIP2BQ9ULR5 123 aaKnown RBP6.05□□□□□ -1.44
VPS53-214ENST00000572607 RBMY1BA6NDE4 496 aaKnown RBP6.04□□□□□ -1.44
VPS53-214ENST00000572607 RBMY1EA6NEQ0 496 aaKnown RBP6.04□□□□□ -1.44
VPS53-214ENST00000572607 IFNA21P01568 189 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 FABP1P07148 127 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 HOXB5P09067 269 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 RBMY1DP0C7P1 496 aaKnown RBP6.04□□□□□ -1.44
VPS53-214ENST00000572607 IGLC1P0CG04 106 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 SLC25A6P12236 298 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms