RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 TRBV9A0A0B4J1U6 114 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 UBE2L5PA0A1B0GUS4 154 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 PRSS46E5RG02 174 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 I3L2K1 104 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 OR2J3O76001 311 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 IFNA7P01567 189 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 IGLV1-40P01703 118 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 FGF7P21781 194 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 PPIFP30405 207 aaKnown RBP5.01□□□□□ -1.61
VPS53-209ENST00000570771 S100A7P31151 101 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 RND2P52198 227 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 PROK1P58294 105 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 TPPP2P59282 170 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 SELENOTP62341 195 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 CFHR3Q02985 330 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 ATP5G2Q06055 141 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 ARL16Q0P5N6 197 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 GAMTQ14353 236 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 RPL7L1Q6DKI1 246 aaKnown RBP5.01□□□□□ -1.61
VPS53-209ENST00000570771 BTNL8Q6UX41 500 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 S100A7AQ86SG5 101 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 BAP18Q8IXM2 172 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 C11orf44Q8N8P7 122 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 OR4X1Q8NH49 305 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 TMEM170AQ8WVE7 144 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 PHYHIPLQ96FC7 376 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 ACY3Q96HD9 319 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 FANCD2OSQ96PS1 177 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 C21orf62Q9NYP8 219 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 WDR83OSQ9Y284 106 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 TIMM9Q9Y5J7 89 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 DMRT1Q9Y5R6 373 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 PKD1L1Q8TDX9 2849 aa5.01□□□□□ -1.61
VPS53-209ENST00000570771 ZFP92A6NM28 416 aa5□□□□□ -1.61
VPS53-209ENST00000570771 ADARB2-AS1A8MUL3 147 aa5□□□□□ -1.61
VPS53-209ENST00000570771 K7EIM0 57 aa5□□□□□ -1.61
VPS53-209ENST00000570771 NUPL2O15504 423 aaKnown RBP5□□□□□ -1.61
VPS53-209ENST00000570771 GNG7O60262 68 aa5□□□□□ -1.61
VPS53-209ENST00000570771 CLN5O75503 358 aa5□□□□□ -1.61
VPS53-209ENST00000570771 CFDP00746 253 aaPredicted RBP5□□□□□ -1.61
VPS53-209ENST00000570771 MBP02144 154 aa5□□□□□ -1.61
VPS53-209ENST00000570771 PRH1P02810 166 aa5□□□□□ -1.61
VPS53-209ENST00000570771 SEC11BP0C7V7 166 aa5□□□□□ -1.61
VPS53-209ENST00000570771 PSMB8P28062 276 aa5□□□□□ -1.61
VPS53-209ENST00000570771 FCGR2BP31994 310 aaPredicted RBP5□□□□□ -1.61
VPS53-209ENST00000570771 CAMLGP49069 296 aa5□□□□□ -1.61
VPS53-209ENST00000570771 RAB5CP51148 216 aa5□□□□□ -1.61
VPS53-209ENST00000570771 RAB9AP51151 201 aa5□□□□□ -1.61
VPS53-209ENST00000570771 MFAP2P55001 183 aa5□□□□□ -1.61
VPS53-209ENST00000570771 SERF2P84101 59 aa5□□□□□ -1.61
VPS53-209ENST00000570771 C15orf32Q32M92 178 aa5□□□□□ -1.61
VPS53-209ENST00000570771 Q56UQ5 140 aa5□□□□□ -1.61
VPS53-209ENST00000570771 AWAT1Q58HT5 328 aa5□□□□□ -1.61
VPS53-209ENST00000570771 SPSB3Q6PJ21 355 aa5□□□□□ -1.61
VPS53-209ENST00000570771 ZNF329Q86UD4 541 aa5□□□□□ -1.61
VPS53-209ENST00000570771 KLHDC1Q8N7A1 406 aa5□□□□□ -1.61
VPS53-209ENST00000570771 THAP8Q8NA92 274 aa5□□□□□ -1.61
VPS53-209ENST00000570771 HSD17B11Q8NBQ5 300 aa5□□□□□ -1.61
VPS53-209ENST00000570771 LRRC20Q8TCA0 184 aa5□□□□□ -1.61
VPS53-209ENST00000570771 SCARB1Q8WTV0 552 aa5□□□□□ -1.61
VPS53-209ENST00000570771 WFDC12Q8WWY7 111 aa5□□□□□ -1.61
VPS53-209ENST00000570771 ST8SIA2Q92186 375 aa5□□□□□ -1.61
VPS53-209ENST00000570771 NPIPB3Q92617 1050 aa5□□□□□ -1.61
VPS53-209ENST00000570771 MS4A10Q96PG2 267 aa5□□□□□ -1.61
VPS53-209ENST00000570771 TRGV9Q99603 122 aa5□□□□□ -1.61
VPS53-209ENST00000570771 GINS3Q9BRX5 216 aa5□□□□□ -1.61
VPS53-209ENST00000570771 PSMG3Q9BT73 122 aaPredicted RBP5□□□□□ -1.61
VPS53-209ENST00000570771 KRTAP4-5Q9BYR2 181 aa5□□□□□ -1.61
VPS53-209ENST00000570771 WDR61Q9GZS3 305 aaKnown RBP5□□□□□ -1.61
VPS53-209ENST00000570771 ARV1Q9H2C2 271 aa5□□□□□ -1.61
VPS53-209ENST00000570771 FNDC4Q9H6D8 234 aaPredicted RBP5□□□□□ -1.61
VPS53-209ENST00000570771 CYTL1Q9NRR1 136 aa5□□□□□ -1.61
VPS53-209ENST00000570771 TCRBV4S1A1TA0A5B7 111 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 CLPSL1A2RUU4 121 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 UMAD1C9J7I0 102 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 AGPAT2O15120 278 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 NDUFB8O95169 186 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 CD28P10747 220 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 OR10J1P30954 320 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 RPL29P47914 159 aaKnown RBP4.99□□□□□ -1.61
VPS53-209ENST00000570771 RELQ04864 619 aaPredicted RBP4.99□□□□□ -1.61
VPS53-209ENST00000570771 FOXL1Q12952 345 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 AKR1C8PQ5T2L2 129 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 PXDC1Q5TGL8 231 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 Q6ZRG5 221 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 ZNF767PQ75MW2 155 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 RNF152Q8N8N0 203 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 BPIFCQ8NFQ6 507 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 OR5AU1Q8NGC0 362 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 ZNF502Q8TBZ5 544 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 BSCL2Q96G97 398 aaPredicted RBP4.99□□□□□ -1.61
VPS53-209ENST00000570771 ZNF414Q96IQ9 312 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 NPCDR1Q9BY65 106 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 KLK15Q9H2R5 256 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 WFDC1Q9HC57 220 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 UBQLN2Q9UHD9 624 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 PFDN2Q9UHV9 154 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 RNF24Q9Y225 148 aa4.99□□□□□ -1.61
VPS53-209ENST00000570771 LSM4Q9Y4Z0 139 aaKnown RBP4.99□□□□□ -1.61
VPS53-209ENST00000570771 RNF114Q9Y508 228 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms