RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CHST10O43529 356 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 IFNA10P01566 189 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 IGLV3-27P01718 113 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 HLA-DRB1P01911 266 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 GIG44P09565 113 aaPredicted RBP2.1□□□□□ -2.07
VPS35-209ENST00000568642 OR4Q2P0C623 313 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 INAFM2P0DMQ5 153 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 COX4I1P13073 169 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 ZNF823P16415 610 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 PSMB3P49720 205 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 KLF3P57682 345 aaPredicted RBP2.1□□□□□ -2.07
VPS35-209ENST00000568642 RPS11P62280 158 aaKnown RBP eCLIP2.1□□□□□ -2.07
VPS35-209ENST00000568642 HERVK_113P63121 156 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 SLC38A11Q08AI6 406 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 ZNF239Q16600 458 aaKnown RBP2.1□□□□□ -2.07
VPS35-209ENST00000568642 CNPY1Q3B7I2 92 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 SP6Q3SY56 376 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 TIMM50Q3ZCQ8 353 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 GLYATL3Q5SZD4 288 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 AKR1C8PQ5T2L2 129 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 MRPL2Q5T653 305 aaKnown RBP2.1□□□□□ -2.07
VPS35-209ENST00000568642 AGTRAPQ6RW13 159 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 IGFL3Q6UXB1 125 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 C1orf174Q8IYL3 243 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 Q8N7P7 452 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 C15orf56Q8N910 161 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 OR2T27Q8NH04 317 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 FAM57AQ8TBR7 257 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 VN1R17PQ8TDU5 208 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 CT55Q8WUE5 264 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 DCAKDQ8WVC6 231 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 DNAJC9Q8WXX5 260 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 MAL2Q969L2 176 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 GPR146Q96CH1 333 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 ZNF799Q96GE5 643 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 DOCK7Q96N67 2140 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 ZNF382Q96SR6 550 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 VPS25Q9BRG1 176 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 JPT2Q9H910 190 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 MMP26Q9NRE1 261 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 DPM3Q9P2X0 92 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 LINC00527Q9UJ94 153 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 PROCRQ9UNN8 238 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 POMPQ9Y244 141 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 AMMECR1Q9Y4X0 333 aaPredicted RBP2.1□□□□□ -2.07
VPS35-209ENST00000568642 FLVCR1Q9Y5Y0 555 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 U3KQ87 197 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 IGHV3-72A0A0B4J1Y9 119 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 IGKV1-12A0A0C4DH73 117 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 LOC100130705A0A1B0GUX0 176 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 FAM172BPA6NC97 362 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 KNCNA6PVL3 124 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 COPEO14579 308 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 SOCS1O15524 211 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 APOMO95445 188 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 LTAP01374 205 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 IGKV1D-12P01611 117 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 RBP1P09455 135 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 CGB3P0DN86 165 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 CGB7P0DN87 165 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 NPY1RP25929 384 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 G6PCP35575 357 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 HIST1H1AQ02539 215 aaPredicted RBP2.09□□□□□ -2.07
VPS35-209ENST00000568642 CST6Q15828 149 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 SSX1Q16384 188 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ZNF181Q2M3W8 571 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ZFP69Q49AA0 526 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ABCA11PQ4W5N1 156 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 LRRC10Q5BKY1 277 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 FAM182AQ5T1J6 154 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ZNF613Q6PF04 617 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 C9orf47Q6ZRZ4 202 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 TCF23Q7RTU1 214 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 TMEM86AQ8N2M4 240 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 FAM24BQ8N5W8 94 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 SLC30A7Q8NEW0 376 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 OR13C4Q8NGS5 318 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 OR13C8Q8NGS7 320 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 OR1L1Q8NH94 360 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 OR5K1Q8NHB7 308 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ZNF675Q8TD23 568 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 C1orf54Q8WWF1 131 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ROPN1LQ96C74 230 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ADAT3Q96EY9 351 aaPredicted RBP2.09□□□□□ -2.07
VPS35-209ENST00000568642 C1orf147Q96MC9 270 aaPredicted RBP2.09□□□□□ -2.07
VPS35-209ENST00000568642 GGTLC1Q9BX51 225 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 GTSF1LQ9H1H1 148 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 ZNF331Q9NQX6 463 aaPredicted RBP2.09□□□□□ -2.07
VPS35-209ENST00000568642 PRTFDC1Q9NRG1 225 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 FBXL12Q9NXK8 326 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 TMEM216Q9P0N5 145 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 TAAR3PQ9P1P4 343 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 RPS6KB2Q9UBS0 482 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 MRPS16Q9Y3D3 137 aaKnown RBP2.09□□□□□ -2.07
VPS35-209ENST00000568642 CSAG2Q9Y5P2 127 aa2.09□□□□□ -2.07
VPS35-209ENST00000568642 RAI1Q7Z5J4 1906 aaPredicted RBP2.09□□□□□ -2.08
VPS35-209ENST00000568642 PCNX3Q9H6A9 2034 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 ZNF407Q9C0G0 2248 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 IGHV3OR16-10A0A075B7F0 116 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 LOC107984640A0A0U1RRK4 108 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms