RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 MARC2Q969Z3 335 aa7.38□□□□□ -1.23
CLK3-220ENST00000567992 TECRQ9NZ01 308 aaKnown RBP7.38□□□□□ -1.23
CLK3-220ENST00000567992 MRPL27Q9P0M9 148 aaKnown RBP7.38□□□□□ -1.23
CLK3-220ENST00000567992 ALG5Q9Y673 324 aa7.38□□□□□ -1.23
CLK3-220ENST00000567992 STAB2Q8WWQ8 2551 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 RPS10-NUDT3A0A1W2PQS6 291 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 PRSS46E5RG02 174 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 INMT-MINDY4F8WBC2 141 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 K7EMT4 169 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 CCSO14618 274 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 ZNF207O43670 478 aaKnown RBP7.37□□□□□ -1.23
CLK3-220ENST00000567992 IGLC1P0CG04 106 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 SLC25A4P12235 298 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 RND2P52198 227 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 NKX2-5P52952 324 aaPredicted RBP7.37□□□□□ -1.23
CLK3-220ENST00000567992 ATP5IP56385 69 aaPredicted RBP7.37□□□□□ -1.23
CLK3-220ENST00000567992 RRAS2P62070 204 aaPredicted RBP7.37□□□□□ -1.23
CLK3-220ENST00000567992 POLR2GP62487 172 aaKnown RBP eCLIP7.37□□□□□ -1.23
CLK3-220ENST00000567992 TIGITQ495A1 244 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 DEFB121Q5J5C9 76 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 ZNF600Q6ZNG1 722 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 SLC16A13Q7RTY0 426 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 NOXA1Q86UR1 476 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 WDR89Q96FK6 387 aaPredicted RBP7.37□□□□□ -1.23
CLK3-220ENST00000567992 B9D2Q9BPU9 175 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 C20orf24Q9BUV8 137 aa7.37□□□□□ -1.23
CLK3-220ENST00000567992 RCL1Q9Y2P8 373 aaKnown RBP7.37□□□□□ -1.23
CLK3-220ENST00000567992 IGHV7-4-1A0A0J9YVY3 117 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 C7orf66A4D0T2 115 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 H3BP45 60 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 MED6O75586 246 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 SCAF4O95104 1147 aaKnown RBP7.36□□□□□ -1.23
CLK3-220ENST00000567992 IFNA21P01568 189 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 C1QBP02746 253 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 IL5P05113 134 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 NKX2-1P43699 371 aaPredicted RBP7.36□□□□□ -1.23
CLK3-220ENST00000567992 PAX9P55771 341 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 IAH1Q2TAA2 248 aaPredicted RBP7.36□□□□□ -1.23
CLK3-220ENST00000567992 C12orf45Q8N5I9 185 aaPredicted RBP7.36□□□□□ -1.23
CLK3-220ENST00000567992 SMPXQ9UHP9 88 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 PUS1Q9Y606 427 aaKnown RBP eCLIP7.36□□□□□ -1.23
CLK3-220ENST00000567992 SMAD5-AS1Q9Y6J3 95 aa7.36□□□□□ -1.23
CLK3-220ENST00000567992 IGKV1D-37A0A075B6S9 117 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 PMS2P5A8MQ11 134 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 A8MZ25 164 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 WRBO00258 174 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 CHEK1O14757 476 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 SSSCA1O60232 199 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 YIF1AO95070 293 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 APOHP02749 345 aaPredicted RBP7.35□□□□□ -1.23
CLK3-220ENST00000567992 IFNA4P05014 189 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 OR10J1P30954 320 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 GPX4P36969 197 aaPredicted RBP7.35□□□□□ -1.23
CLK3-220ENST00000567992 GAMTQ14353 236 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 ETFRF1Q6IPR1 90 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 OR1S2Q8NGQ3 325 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 NPIPB3Q92617 1050 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 ACY3Q96HD9 319 aa7.35□□□□□ -1.23
CLK3-220ENST00000567992 CIB3Q96Q77 187 aaPredicted RBP7.35□□□□□ -1.23
CLK3-220ENST00000567992 NBEAL2Q6ZNJ1 2754 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 IGKV1OR2-108A0A075B7D4 117 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 IGHV3OR16-13A0A075B7E8 117 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 TRAV30A0A087WSZ9 112 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 IGHV3-49A0A0A0MS15 119 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 IGHV3-74A0A0B4J1X5 117 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 TRAV25A0A0B4J276 109 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 MBPP02686 304 aaPredicted RBP7.34□□□□□ -1.23
CLK3-220ENST00000567992 CD7P09564 240 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 FRMD6-AS1P0C7T7 363 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 IGHV4-30-4P0DP06 118 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 S100A1P23297 94 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 CD81P60033 236 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 YPEL3P61236 119 aaPredicted RBP7.34□□□□□ -1.23
CLK3-220ENST00000567992 IL15RAQ13261 267 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 GUCA2BQ16661 112 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 SPANXN5Q5MJ07 72 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 TMEM14EPQ6UXP3 125 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 LILRB2Q8N423 598 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 ST8SIA2Q92186 375 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 SMIM8Q96KF7 97 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 RNF2Q99496 336 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 RHPN1-AS1Q9BWJ2 59 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 WFDC10AQ9H1F0 79 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 C11orf1Q9H5F2 150 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 VSIRQ9H7M9 311 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 C19orf73Q9NVV2 129 aa7.34□□□□□ -1.23
CLK3-220ENST00000567992 TRAV14DV4A0A0A6YYC5 116 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 SNRPGP15A8MWD9 76 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 TSPAN4O14817 238 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 SCGB1D2O95969 90 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 TOMM40O96008 361 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 RAB11AP62491 216 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 USF2Q15853 346 aaPredicted RBP7.33□□□□□ -1.24
CLK3-220ENST00000567992 FAM90A2PQ658T7 463 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 GTSCR1Q86UQ5 136 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 THAP8Q8NA92 274 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 SLC35E1Q96K37 410 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 SPAG8Q99932 426 aaPredicted RBP7.33□□□□□ -1.24
CLK3-220ENST00000567992 GINS3Q9BRX5 216 aa7.33□□□□□ -1.24
CLK3-220ENST00000567992 GSKIPQ9P0R6 139 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms