RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SIGLEC8Q9NYZ4 499 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 K7EIL1 84 aa14.79□□□□□ -0.04
CLN3-225ENST00000566824 GPX4P36969 197 aaPredicted RBP14.79□□□□□ -0.04
CLN3-225ENST00000566824 RAB11AP62491 216 aa14.79□□□□□ -0.04
CLN3-225ENST00000566824 TMEM14EPQ6UXP3 125 aa14.79□□□□□ -0.04
CLN3-225ENST00000566824 RAB40CQ96S21 281 aa14.79□□□□□ -0.04
CLN3-225ENST00000566824 ZFAND3Q9H8U3 227 aa14.79□□□□□ -0.04
CLN3-225ENST00000566824 MLXQ9UH92 298 aa14.79□□□□□ -0.04
CLN3-225ENST00000566824 IGKV1D-37A0A075B6S9 117 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 YIF1AO95070 293 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 METTL15P1P0C7V9 234 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 C8orf88P0DMB2 117 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 OR10J1P30954 320 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 S100A10P60903 97 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 RELQ04864 619 aaPredicted RBP14.78□□□□□ -0.04
CLN3-225ENST00000566824 ARL16Q0P5N6 197 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 RGS21Q2M5E4 152 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 ETFRF1Q6IPR1 90 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 UFC1Q9Y3C8 167 aa14.78□□□□□ -0.04
CLN3-225ENST00000566824 PUS1Q9Y606 427 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLN3-225ENST00000566824 IGHV3-49A0A0A0MS15 119 aa14.77□□□□□ -0.04
CLN3-225ENST00000566824 RPP30P78346 268 aaKnown RBP14.77□□□□□ -0.04
CLN3-225ENST00000566824 OXA1LQ15070 435 aa14.77□□□□□ -0.04
CLN3-225ENST00000566824 DEFB114Q30KQ6 69 aa14.77□□□□□ -0.04
CLN3-225ENST00000566824 CD300EQ496F6 205 aaPredicted RBP14.77□□□□□ -0.04
CLN3-225ENST00000566824 OR8G2PQ6IF36 304 aa14.77□□□□□ -0.04
CLN3-225ENST00000566824 ZNF600Q6ZNG1 722 aa14.77□□□□□ -0.04
CLN3-225ENST00000566824 MGAT4CQ9UBM8 478 aa14.77□□□□□ -0.04
CLN3-225ENST00000566824 ZNF256Q9Y2P7 627 aaPredicted RBP14.77□□□□□ -0.04
CLN3-225ENST00000566824 IGKV1OR2-108A0A075B7D4 117 aa14.76□□□□□ -0.05
CLN3-225ENST00000566824 TSC22D2O75157 780 aa14.76□□□□□ -0.05
CLN3-225ENST00000566824 ELLP55199 621 aaPredicted RBP14.76□□□□□ -0.05
CLN3-225ENST00000566824 TAS2R30P59541 319 aa14.76□□□□□ -0.05
CLN3-225ENST00000566824 DAZ1Q9NQZ3 744 aaKnown RBP14.76□□□□□ -0.05
CLN3-225ENST00000566824 IGHV3OR16-13A0A075B7E8 117 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 IGHV3-74A0A0B4J1X5 117 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 FAM24AA6NFZ4 105 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 H0YIZ8 118 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 LY86O95711 162 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 APOHP02749 345 aaPredicted RBP14.75□□□□□ -0.05
CLN3-225ENST00000566824 CXCL3P19876 107 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 BTNL8Q6UX41 500 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 ACOT7LQ6ZUV0 252 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 OR1S2Q8NGQ3 325 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 DYNLRB2Q8TF09 96 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 SLC35E1Q96K37 410 aa14.75□□□□□ -0.05
CLN3-225ENST00000566824 TRAV30A0A087WSZ9 112 aa14.74□□□□□ -0.05
CLN3-225ENST00000566824 K7EMT4 169 aa14.74□□□□□ -0.05
CLN3-225ENST00000566824 L7N2F9 121 aa14.74□□□□□ -0.05
CLN3-225ENST00000566824 VAMP2P63027 116 aa14.74□□□□□ -0.05
CLN3-225ENST00000566824 ZNF90Q03938 601 aa14.74□□□□□ -0.05
CLN3-225ENST00000566824 NMES1Q9C002 83 aa14.74□□□□□ -0.05
CLN3-225ENST00000566824 OR5AC2Q9NZP5 309 aa14.74□□□□□ -0.05
CLN3-225ENST00000566824 MRPL27Q9P0M9 148 aaKnown RBP14.74□□□□□ -0.05
CLN3-225ENST00000566824 IGHV7-4-1A0A0J9YVY3 117 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 IGSF23A1L1A6 192 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 ZNF785A8K8V0 405 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 SCAF4O95104 1147 aaKnown RBP14.73□□□□□ -0.05
CLN3-225ENST00000566824 GP9P14770 177 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 YPEL3P61236 119 aaPredicted RBP14.73□□□□□ -0.05
CLN3-225ENST00000566824 RRAS2P62070 204 aaPredicted RBP14.73□□□□□ -0.05
CLN3-225ENST00000566824 FCN2Q15485 313 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 LRRC37A5PQ49AS3 106 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 TMEM61Q8N0U2 210 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 LILRB2Q8N423 598 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 SMPXQ9UHP9 88 aa14.73□□□□□ -0.05
CLN3-225ENST00000566824 BCAP31P51572 246 aa14.72□□□□□ -0.05
CLN3-225ENST00000566824 THAP8Q8NA92 274 aa14.72□□□□□ -0.05
CLN3-225ENST00000566824 OR11H7Q8NGC8 314 aa14.72□□□□□ -0.05
CLN3-225ENST00000566824 MARC2Q969Z3 335 aa14.72□□□□□ -0.05
CLN3-225ENST00000566824 TRAV14DV4A0A0A6YYC5 116 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 IGHV3-66A0A0C4DH42 116 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 ZFP92A6NM28 416 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 CHEK1O14757 476 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 DEDDO75618 318 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 CST7O76096 145 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 TOMM40O96008 361 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 PSG1P11464 419 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 CAV2P51636 162 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 USF2Q15853 346 aaPredicted RBP14.71□□□□□ -0.05
CLN3-225ENST00000566824 TMEM182Q6ZP80 229 aaPredicted RBP14.71□□□□□ -0.05
CLN3-225ENST00000566824 MRAPQ8TCY5 172 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 RNF126Q9BV68 326 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 RHPN1-AS1Q9BWJ2 59 aa14.71□□□□□ -0.05
CLN3-225ENST00000566824 TECRQ9NZ01 308 aaKnown RBP14.71□□□□□ -0.05
CLN3-225ENST00000566824 RD3LP0DJH9 198 aa14.7□□□□□ -0.06
CLN3-225ENST00000566824 OR2F1Q13607 317 aa14.7□□□□□ -0.06
CLN3-225ENST00000566824 Q8WTZ3 238 aa14.7□□□□□ -0.06
CLN3-225ENST00000566824 PPP1R1CQ8WVI7 109 aa14.7□□□□□ -0.06
CLN3-225ENST00000566824 ST8SIA2Q92186 375 aa14.7□□□□□ -0.06
CLN3-225ENST00000566824 RNF2Q99496 336 aa14.7□□□□□ -0.06
CLN3-225ENST00000566824 LYRM2Q9NU23 88 aaPredicted RBP14.7□□□□□ -0.06
CLN3-225ENST00000566824 TGP01266 2768 aa14.7□□□□□ -0.06
CLN3-225ENST00000566824 SMCO3A2RU48 225 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 IL4P05112 153 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 GATA2P23769 480 aaPredicted RBP14.69□□□□□ -0.06
CLN3-225ENST00000566824 DLK1P80370 383 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 LCN12Q6JVE5 192 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 Q8N1Y9 231 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 TMEM252Q8N6L7 170 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms