RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TCRBV4S1A1TA0A5B7 111 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 DNAJC9-AS1A6NH13 148 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 SCGB2A1O75556 95 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 CXorf1O96002 111 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 HSPB1P04792 205 aaKnown RBP7.06□□□□□ -1.28
VPS39-207ENST00000563692 SFTA3P0C7M3 94 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 APELAP0DMC3 54 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 HIST1H1BP16401 226 aaKnown RBP7.06□□□□□ -1.28
VPS39-207ENST00000563692 PSMB3P49720 205 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 PRR20EP86478 221 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 PRR20CP86479 221 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 PRR20DP86480 221 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 PRR20BP86481 221 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 PRR20AP86496 221 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 FOXL1Q12952 345 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 ZNF726P1Q15940 193 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 HAGHQ16775 308 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 ZNF506Q5JVG8 444 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 C10orf91Q5T1B1 145 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 BRD3OSQ6XYD6 125 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 C9orf139Q6ZV77 190 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 BCL6BQ8N143 479 aaPredicted RBP7.06□□□□□ -1.28
VPS39-207ENST00000563692 SVBPQ8N300 66 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 THAP8Q8NA92 274 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 TMEM116Q8NCL8 245 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 OR1L4Q8NGR5 311 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 RAB24Q969Q5 203 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 DUX5Q96PT3 197 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 SSX3Q99909 188 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 SLC25A33Q9BSK2 321 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 MANBALQ9NQG1 85 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 VAX2Q9UIW0 290 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 FBN3Q75N90 2809 aa7.06□□□□□ -1.28
VPS39-207ENST00000563692 TRAV30A0A087WSZ9 112 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 IGHV7-81A0A0B4J1V7 117 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 CLDN34H7C241 214 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 M0QZK8 103 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 YIF1AO95070 293 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 SNAPINO95295 136 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 CRYBA1P05813 215 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 RNASE1P07998 156 aaKnown RBP7.05□□□□□ -1.28
VPS39-207ENST00000563692 LINC00869P0C866 280 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 FGF8P55075 233 aaPredicted RBP7.05□□□□□ -1.28
VPS39-207ENST00000563692 TAS2R45P59539 299 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 SSBP2P81877 361 aaPredicted RBP7.05□□□□□ -1.28
VPS39-207ENST00000563692 AWAT1Q58HT5 328 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 C16orf82Q7Z2V1 217 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 RXFP4Q8TDU9 374 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 GATAD1Q8WUU5 269 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 PFDN5Q99471 154 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 TRGV9Q99603 122 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 RARRES2Q99969 163 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 FNDC4Q9H6D8 234 aaPredicted RBP7.05□□□□□ -1.28
VPS39-207ENST00000563692 SLC25A22Q9H936 323 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 DNAJC4Q9NNZ3 241 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 TNFRSF19Q9NS68 423 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 CARHSP1Q9Y2V2 147 aaKnown RBP7.05□□□□□ -1.28
VPS39-207ENST00000563692 MOB4Q9Y3A3 225 aa7.05□□□□□ -1.28
VPS39-207ENST00000563692 ELOA3CA0A087WX78 387 aaPredicted RBP7.04□□□□□ -1.28
VPS39-207ENST00000563692 LOC102723971A0A1B0GUV8 181 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 NDUFS6O75380 124 aaKnown RBP7.04□□□□□ -1.28
VPS39-207ENST00000563692 STAG3L2P0CL84 134 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 STAG3L3P0CL85 134 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 BCL2P10415 239 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 NPBWR1P48145 328 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 RND2P52198 227 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 MFAP2P55001 183 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 SOHLH1Q5JUK2 328 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 FAM78BQ5VT40 261 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 S100A7AQ86SG5 101 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 IQCF2Q8IXL9 164 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 OR4X1Q8NH49 305 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 SGMS2Q8NHU3 365 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 SUN5Q8TC36 379 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 ZNF48Q96MX3 618 aaPredicted RBP7.04□□□□□ -1.28
VPS39-207ENST00000563692 TXNDC17Q9BRA2 123 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 FAM103A1Q9BTL3 118 aaKnown RBP7.04□□□□□ -1.28
VPS39-207ENST00000563692 SCRT1Q9BWW7 348 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 MRPL32Q9BYC8 188 aaKnown RBP7.04□□□□□ -1.28
VPS39-207ENST00000563692 TECRQ9NZ01 308 aaKnown RBP7.04□□□□□ -1.28
VPS39-207ENST00000563692 FUT9Q9Y231 359 aa7.04□□□□□ -1.28
VPS39-207ENST00000563692 TET2Q6N021 2002 aaPredicted RBP7.03□□□□□ -1.28
VPS39-207ENST00000563692 IGKV1OR2-108A0A075B7D4 117 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 H3BUX3 64 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 I3L2K1 104 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 HMGB3O15347 200 aaKnown RBP7.03□□□□□ -1.28
VPS39-207ENST00000563692 COX7A2P2O60397 106 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 CLN5O75503 358 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 SRP19P09132 144 aaKnown RBP7.03□□□□□ -1.28
VPS39-207ENST00000563692 MFAP4P55083 255 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 ICAM4Q14773 271 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 DEFB112Q30KQ8 113 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 AKIRIN2Q53H80 203 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 GCSAMLQ5JQS6 135 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 C10orf113Q5VZT2 155 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 UNQ5815/PRO19632Q6UWF5 114 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 SSX7Q7RTT5 188 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 C5orf56Q8N8D9 126 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 OR5T1Q8NG75 326 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 PIFOQ8TCI5 191 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms